miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 60152 0.66 0.726492
Target:  5'- -aGgCgcUGCAGGcGCCgCUGCCGugGAa -3'
miRNA:   3'- aaCgGaaACGUCC-UGG-GGCGGCugCU- -5'
23698 3' -59 NC_005261.1 + 74415 0.66 0.720571
Target:  5'- -gGCCgcggGCGGGagggccgaggagagcGCCCCcCCGGCGGg -3'
miRNA:   3'- aaCGGaaa-CGUCC---------------UGGGGcGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 30215 0.66 0.716608
Target:  5'- -gGCCgcgcugGCGGcgcgaaccguGGCCCCGCUGGCGc -3'
miRNA:   3'- aaCGGaaa---CGUC----------CUGGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 61531 0.66 0.716608
Target:  5'- -gGCCUUcuccgGCAagcgccGcGGCgCCGCCGACGAu -3'
miRNA:   3'- aaCGGAAa----CGU------C-CUGgGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 42666 0.66 0.716608
Target:  5'- -aGCCaagcggcgGCcGGGCCgCCGCCGGCa- -3'
miRNA:   3'- aaCGGaaa-----CGuCCUGG-GGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 113305 0.66 0.716608
Target:  5'- cUGCCgcggGCcuGGGCCCgGCUGcGCGAg -3'
miRNA:   3'- aACGGaaa-CGu-CCUGGGgCGGC-UGCU- -5'
23698 3' -59 NC_005261.1 + 87499 0.66 0.716608
Target:  5'- gUGCUggcgcGCAGGcGCUcgCCGCCGugGAa -3'
miRNA:   3'- aACGGaaa--CGUCC-UGG--GGCGGCugCU- -5'
23698 3' -59 NC_005261.1 + 28592 0.66 0.706652
Target:  5'- -cGCCg--GCGGGccGCCCgCGCCGAg-- -3'
miRNA:   3'- aaCGGaaaCGUCC--UGGG-GCGGCUgcu -5'
23698 3' -59 NC_005261.1 + 88195 0.67 0.696633
Target:  5'- -cGCCggcgagGCGGG-CCgCGCCGGCa- -3'
miRNA:   3'- aaCGGaaa---CGUCCuGGgGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 51970 0.67 0.696633
Target:  5'- -cGCCgcgcUGCuGGACCgcggcgccgCCGCCGACu- -3'
miRNA:   3'- aaCGGaa--ACGuCCUGG---------GGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 16406 0.67 0.696633
Target:  5'- -cGCCgggcggUGCGGGagagGCCCCcUCGACGGc -3'
miRNA:   3'- aaCGGaa----ACGUCC----UGGGGcGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 14067 0.67 0.696633
Target:  5'- -gGCCgcgucCAGGGCCaCGUCGGCGAa -3'
miRNA:   3'- aaCGGaaac-GUCCUGGgGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 82882 0.67 0.695628
Target:  5'- -cGCUg--GCGGuGGCCUcgccgcgCGCCGACGAg -3'
miRNA:   3'- aaCGGaaaCGUC-CUGGG-------GCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 135560 0.67 0.686561
Target:  5'- cUGCCccUGCgcaccaAGGACCCCaucguggccacgGCCGGCGc -3'
miRNA:   3'- aACGGaaACG------UCCUGGGG------------CGGCUGCu -5'
23698 3' -59 NC_005261.1 + 134362 0.67 0.686561
Target:  5'- -cGCCgc-GCGGGgggcgGCgCCGCUGGCGAc -3'
miRNA:   3'- aaCGGaaaCGUCC-----UGgGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 121371 0.67 0.686561
Target:  5'- -cGCgUacUGCAGGcGCCCCGCggCGGCGGc -3'
miRNA:   3'- aaCGgAa-ACGUCC-UGGGGCG--GCUGCU- -5'
23698 3' -59 NC_005261.1 + 108875 0.67 0.685551
Target:  5'- -aGCagcgGguGGACgacggccgcgcugCCCGCCGGCGAg -3'
miRNA:   3'- aaCGgaaaCguCCUG-------------GGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 29267 0.67 0.676443
Target:  5'- -cGCCgcUGgAGGGCCCgcUGCUGACGc -3'
miRNA:   3'- aaCGGaaACgUCCUGGG--GCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 42112 0.67 0.676443
Target:  5'- gUGCCggcccaGCAGcccGGCCUCGUCGAUGAc -3'
miRNA:   3'- aACGGaaa---CGUC---CUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 107691 0.67 0.676443
Target:  5'- -cGCCgcgGCGGGGgCgCCGCCGAaCGu -3'
miRNA:   3'- aaCGGaaaCGUCCUgG-GGCGGCU-GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.