miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 31926 0.66 0.755621
Target:  5'- -cGCCgccGCuGGGCUCUGCCG-CGGc -3'
miRNA:   3'- aaCGGaaaCGuCCUGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 61417 0.66 0.726492
Target:  5'- -gGCCUc-GCAGGACCUggccuCGCUGACc- -3'
miRNA:   3'- aaCGGAaaCGUCCUGGG-----GCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 5115 0.66 0.746008
Target:  5'- -cGCCagcucgGCGcGGGCggCCCGCCGGCGc -3'
miRNA:   3'- aaCGGaaa---CGU-CCUG--GGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 101673 0.66 0.746008
Target:  5'- -cGCCUc-GUAGG-CCgaGCCGGCGAa -3'
miRNA:   3'- aaCGGAaaCGUCCuGGggCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 31003 0.66 0.755621
Target:  5'- -gGCCgggGCcaGGGGCCCggCGCCGGCc- -3'
miRNA:   3'- aaCGGaaaCG--UCCUGGG--GCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 31307 0.66 0.746008
Target:  5'- -cGCCgc-GCGGGGCCC-GCgGGCGc -3'
miRNA:   3'- aaCGGaaaCGUCCUGGGgCGgCUGCu -5'
23698 3' -59 NC_005261.1 + 73705 0.66 0.755621
Target:  5'- -gGCCauggcGCAGGACCgCgGUCGGCGu -3'
miRNA:   3'- aaCGGaaa--CGUCCUGG-GgCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 71618 0.66 0.755621
Target:  5'- -gGCCcggGCGcGGGCCCgGgCGGCGGg -3'
miRNA:   3'- aaCGGaaaCGU-CCUGGGgCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 129709 0.67 0.676443
Target:  5'- -gGCCggagGCAGG--CCCGCCGGCu- -3'
miRNA:   3'- aaCGGaaa-CGUCCugGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 28660 0.67 0.645909
Target:  5'- -gGCCg--GCGGGGCCgaCGaCGACGAg -3'
miRNA:   3'- aaCGGaaaCGUCCUGGg-GCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 127727 0.67 0.645909
Target:  5'- cUGCCUgguaGCGGGAgCuuGgCGGCGGg -3'
miRNA:   3'- aACGGAaa--CGUCCUgGggCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 68509 0.67 0.66629
Target:  5'- -cGCUgaUGCAGgcGugCCUGCCGGCGc -3'
miRNA:   3'- aaCGGaaACGUC--CugGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 42112 0.67 0.676443
Target:  5'- gUGCCggcccaGCAGcccGGCCUCGUCGAUGAc -3'
miRNA:   3'- aACGGaaa---CGUC---CUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 29267 0.67 0.676443
Target:  5'- -cGCCgcUGgAGGGCCCgcUGCUGACGc -3'
miRNA:   3'- aaCGGaaACgUCCUGGG--GCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 88195 0.67 0.696633
Target:  5'- -cGCCggcgagGCGGG-CCgCGCCGGCa- -3'
miRNA:   3'- aaCGGaaa---CGUCCuGGgGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 51970 0.67 0.696633
Target:  5'- -cGCCgcgcUGCuGGACCgcggcgccgCCGCCGACu- -3'
miRNA:   3'- aaCGGaa--ACGuCCUGG---------GGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 16406 0.67 0.696633
Target:  5'- -cGCCgggcggUGCGGGagagGCCCCcUCGACGGc -3'
miRNA:   3'- aaCGGaa----ACGUCC----UGGGGcGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 14067 0.67 0.696633
Target:  5'- -gGCCgcgucCAGGGCCaCGUCGGCGAa -3'
miRNA:   3'- aaCGGaaac-GUCCUGGgGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 82882 0.67 0.695628
Target:  5'- -cGCUg--GCGGuGGCCUcgccgcgCGCCGACGAg -3'
miRNA:   3'- aaCGGaaaCGUC-CUGGG-------GCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 121371 0.67 0.686561
Target:  5'- -cGCgUacUGCAGGcGCCCCGCggCGGCGGc -3'
miRNA:   3'- aaCGgAa-ACGUCC-UGGGGCG--GCUGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.