Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23698 | 3' | -59 | NC_005261.1 | + | 31926 | 0.66 | 0.755621 |
Target: 5'- -cGCCgccGCuGGGCUCUGCCG-CGGc -3' miRNA: 3'- aaCGGaaaCGuCCUGGGGCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 61417 | 0.66 | 0.726492 |
Target: 5'- -gGCCUc-GCAGGACCUggccuCGCUGACc- -3' miRNA: 3'- aaCGGAaaCGUCCUGGG-----GCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 5115 | 0.66 | 0.746008 |
Target: 5'- -cGCCagcucgGCGcGGGCggCCCGCCGGCGc -3' miRNA: 3'- aaCGGaaa---CGU-CCUG--GGGCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 101673 | 0.66 | 0.746008 |
Target: 5'- -cGCCUc-GUAGG-CCgaGCCGGCGAa -3' miRNA: 3'- aaCGGAaaCGUCCuGGggCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 31003 | 0.66 | 0.755621 |
Target: 5'- -gGCCgggGCcaGGGGCCCggCGCCGGCc- -3' miRNA: 3'- aaCGGaaaCG--UCCUGGG--GCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 31307 | 0.66 | 0.746008 |
Target: 5'- -cGCCgc-GCGGGGCCC-GCgGGCGc -3' miRNA: 3'- aaCGGaaaCGUCCUGGGgCGgCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 73705 | 0.66 | 0.755621 |
Target: 5'- -gGCCauggcGCAGGACCgCgGUCGGCGu -3' miRNA: 3'- aaCGGaaa--CGUCCUGG-GgCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 71618 | 0.66 | 0.755621 |
Target: 5'- -gGCCcggGCGcGGGCCCgGgCGGCGGg -3' miRNA: 3'- aaCGGaaaCGU-CCUGGGgCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 129709 | 0.67 | 0.676443 |
Target: 5'- -gGCCggagGCAGG--CCCGCCGGCu- -3' miRNA: 3'- aaCGGaaa-CGUCCugGGGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 28660 | 0.67 | 0.645909 |
Target: 5'- -gGCCg--GCGGGGCCgaCGaCGACGAg -3' miRNA: 3'- aaCGGaaaCGUCCUGGg-GCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 127727 | 0.67 | 0.645909 |
Target: 5'- cUGCCUgguaGCGGGAgCuuGgCGGCGGg -3' miRNA: 3'- aACGGAaa--CGUCCUgGggCgGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 68509 | 0.67 | 0.66629 |
Target: 5'- -cGCUgaUGCAGgcGugCCUGCCGGCGc -3' miRNA: 3'- aaCGGaaACGUC--CugGGGCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 42112 | 0.67 | 0.676443 |
Target: 5'- gUGCCggcccaGCAGcccGGCCUCGUCGAUGAc -3' miRNA: 3'- aACGGaaa---CGUC---CUGGGGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 29267 | 0.67 | 0.676443 |
Target: 5'- -cGCCgcUGgAGGGCCCgcUGCUGACGc -3' miRNA: 3'- aaCGGaaACgUCCUGGG--GCGGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 88195 | 0.67 | 0.696633 |
Target: 5'- -cGCCggcgagGCGGG-CCgCGCCGGCa- -3' miRNA: 3'- aaCGGaaa---CGUCCuGGgGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 51970 | 0.67 | 0.696633 |
Target: 5'- -cGCCgcgcUGCuGGACCgcggcgccgCCGCCGACu- -3' miRNA: 3'- aaCGGaa--ACGuCCUGG---------GGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 16406 | 0.67 | 0.696633 |
Target: 5'- -cGCCgggcggUGCGGGagagGCCCCcUCGACGGc -3' miRNA: 3'- aaCGGaa----ACGUCC----UGGGGcGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 14067 | 0.67 | 0.696633 |
Target: 5'- -gGCCgcgucCAGGGCCaCGUCGGCGAa -3' miRNA: 3'- aaCGGaaac-GUCCUGGgGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 82882 | 0.67 | 0.695628 |
Target: 5'- -cGCUg--GCGGuGGCCUcgccgcgCGCCGACGAg -3' miRNA: 3'- aaCGGaaaCGUC-CUGGG-------GCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 121371 | 0.67 | 0.686561 |
Target: 5'- -cGCgUacUGCAGGcGCCCCGCggCGGCGGc -3' miRNA: 3'- aaCGgAa-ACGUCC-UGGGGCG--GCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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