miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 32420 0.7 0.505312
Target:  5'- -cGCCggcGaCGGGAgCCCCGCCGGCc- -3'
miRNA:   3'- aaCGGaaaC-GUCCU-GGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 119540 0.7 0.505312
Target:  5'- -gGCCga-GCAaGGCCCCGCCG-CGGg -3'
miRNA:   3'- aaCGGaaaCGUcCUGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 8 0.7 0.515018
Target:  5'- -cGCCccucgUGCAgcGGGCCCCGCgCGACc- -3'
miRNA:   3'- aaCGGaa---ACGU--CCUGGGGCG-GCUGcu -5'
23698 3' -59 NC_005261.1 + 137692 0.7 0.515018
Target:  5'- -cGCCccucgUGCAgcGGGCCCCGCgCGACc- -3'
miRNA:   3'- aaCGGaa---ACGU--CCUGGGGCG-GCUGcu -5'
23698 3' -59 NC_005261.1 + 37449 0.7 0.520878
Target:  5'- -cGCCgaagauauaagGCGGGugCUCGCCGGCa- -3'
miRNA:   3'- aaCGGaaa--------CGUCCugGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 119280 0.7 0.524799
Target:  5'- -cGCUgg-GCGGGGgCUCGCCGAgGAa -3'
miRNA:   3'- aaCGGaaaCGUCCUgGGGCGGCUgCU- -5'
23698 3' -59 NC_005261.1 + 11907 0.7 0.524799
Target:  5'- -cGCCgcggGCccGGCCCgGCCGGCGGc -3'
miRNA:   3'- aaCGGaaa-CGucCUGGGgCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 95005 0.7 0.524799
Target:  5'- -cGCCc-UGCGGGgcgggcuauaaaGCCgCCGCCGGCGGc -3'
miRNA:   3'- aaCGGaaACGUCC------------UGG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 104434 0.69 0.564565
Target:  5'- -aGCUUgaGCGGGcccgcgucGCCgCCGCCGGCGGc -3'
miRNA:   3'- aaCGGAaaCGUCC--------UGG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 117589 0.69 0.57464
Target:  5'- -cGCCgcUGUc-GAUCCUGCCGACGAu -3'
miRNA:   3'- aaCGGaaACGucCUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 10515 0.69 0.57464
Target:  5'- -cGCCgcUGCGGG-CCCCG-CGGCGc -3'
miRNA:   3'- aaCGGaaACGUCCuGGGGCgGCUGCu -5'
23698 3' -59 NC_005261.1 + 36568 0.69 0.57464
Target:  5'- -aGCCgagcugaGCGGGGgCCCGCCG-CGGc -3'
miRNA:   3'- aaCGGaaa----CGUCCUgGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 84564 0.68 0.584755
Target:  5'- -cGCCUggaGCAcGGCCCCGuaGACGGc -3'
miRNA:   3'- aaCGGAaa-CGUcCUGGGGCggCUGCU- -5'
23698 3' -59 NC_005261.1 + 72870 0.68 0.594903
Target:  5'- -gGaCCgcggGCAGGuccGCCCCGCCGcCGGg -3'
miRNA:   3'- aaC-GGaaa-CGUCC---UGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 9344 0.68 0.594903
Target:  5'- -aGCCcac-CGGGAgCaCCGCCGACGAu -3'
miRNA:   3'- aaCGGaaacGUCCUgG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 118021 0.68 0.605079
Target:  5'- cUGUCggacgcacGCGGGGCCCgGCCG-CGAc -3'
miRNA:   3'- aACGGaaa-----CGUCCUGGGgCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 110986 0.68 0.605079
Target:  5'- -cGCCUUcgUGCgccugGGGACgCUGCCGcACGAc -3'
miRNA:   3'- aaCGGAA--ACG-----UCCUGgGGCGGC-UGCU- -5'
23698 3' -59 NC_005261.1 + 17561 0.68 0.605079
Target:  5'- -cGCCguucgGCGGuGGCCuuGCgGGCGAg -3'
miRNA:   3'- aaCGGaaa--CGUC-CUGGggCGgCUGCU- -5'
23698 3' -59 NC_005261.1 + 16044 0.68 0.605079
Target:  5'- -cGCCUUcuuggGCAgcGGGCCCgCGCCGAgcCGGc -3'
miRNA:   3'- aaCGGAAa----CGU--CCUGGG-GCGGCU--GCU- -5'
23698 3' -59 NC_005261.1 + 81461 0.68 0.615275
Target:  5'- -cGCCagcaGCAGGGCCCaCGCCGcccaGAg -3'
miRNA:   3'- aaCGGaaa-CGUCCUGGG-GCGGCug--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.