Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23698 | 3' | -59 | NC_005261.1 | + | 32420 | 0.7 | 0.505312 |
Target: 5'- -cGCCggcGaCGGGAgCCCCGCCGGCc- -3' miRNA: 3'- aaCGGaaaC-GUCCU-GGGGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 119540 | 0.7 | 0.505312 |
Target: 5'- -gGCCga-GCAaGGCCCCGCCG-CGGg -3' miRNA: 3'- aaCGGaaaCGUcCUGGGGCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 8 | 0.7 | 0.515018 |
Target: 5'- -cGCCccucgUGCAgcGGGCCCCGCgCGACc- -3' miRNA: 3'- aaCGGaa---ACGU--CCUGGGGCG-GCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 137692 | 0.7 | 0.515018 |
Target: 5'- -cGCCccucgUGCAgcGGGCCCCGCgCGACc- -3' miRNA: 3'- aaCGGaa---ACGU--CCUGGGGCG-GCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 37449 | 0.7 | 0.520878 |
Target: 5'- -cGCCgaagauauaagGCGGGugCUCGCCGGCa- -3' miRNA: 3'- aaCGGaaa--------CGUCCugGGGCGGCUGcu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 119280 | 0.7 | 0.524799 |
Target: 5'- -cGCUgg-GCGGGGgCUCGCCGAgGAa -3' miRNA: 3'- aaCGGaaaCGUCCUgGGGCGGCUgCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 11907 | 0.7 | 0.524799 |
Target: 5'- -cGCCgcggGCccGGCCCgGCCGGCGGc -3' miRNA: 3'- aaCGGaaa-CGucCUGGGgCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 95005 | 0.7 | 0.524799 |
Target: 5'- -cGCCc-UGCGGGgcgggcuauaaaGCCgCCGCCGGCGGc -3' miRNA: 3'- aaCGGaaACGUCC------------UGG-GGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 104434 | 0.69 | 0.564565 |
Target: 5'- -aGCUUgaGCGGGcccgcgucGCCgCCGCCGGCGGc -3' miRNA: 3'- aaCGGAaaCGUCC--------UGG-GGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 117589 | 0.69 | 0.57464 |
Target: 5'- -cGCCgcUGUc-GAUCCUGCCGACGAu -3' miRNA: 3'- aaCGGaaACGucCUGGGGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 10515 | 0.69 | 0.57464 |
Target: 5'- -cGCCgcUGCGGG-CCCCG-CGGCGc -3' miRNA: 3'- aaCGGaaACGUCCuGGGGCgGCUGCu -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 36568 | 0.69 | 0.57464 |
Target: 5'- -aGCCgagcugaGCGGGGgCCCGCCG-CGGc -3' miRNA: 3'- aaCGGaaa----CGUCCUgGGGCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 84564 | 0.68 | 0.584755 |
Target: 5'- -cGCCUggaGCAcGGCCCCGuaGACGGc -3' miRNA: 3'- aaCGGAaa-CGUcCUGGGGCggCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 72870 | 0.68 | 0.594903 |
Target: 5'- -gGaCCgcggGCAGGuccGCCCCGCCGcCGGg -3' miRNA: 3'- aaC-GGaaa-CGUCC---UGGGGCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 9344 | 0.68 | 0.594903 |
Target: 5'- -aGCCcac-CGGGAgCaCCGCCGACGAu -3' miRNA: 3'- aaCGGaaacGUCCUgG-GGCGGCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 16044 | 0.68 | 0.605079 |
Target: 5'- -cGCCUUcuuggGCAgcGGGCCCgCGCCGAgcCGGc -3' miRNA: 3'- aaCGGAAa----CGU--CCUGGG-GCGGCU--GCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 17561 | 0.68 | 0.605079 |
Target: 5'- -cGCCguucgGCGGuGGCCuuGCgGGCGAg -3' miRNA: 3'- aaCGGaaa--CGUC-CUGGggCGgCUGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 110986 | 0.68 | 0.605079 |
Target: 5'- -cGCCUUcgUGCgccugGGGACgCUGCCGcACGAc -3' miRNA: 3'- aaCGGAA--ACG-----UCCUGgGGCGGC-UGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 118021 | 0.68 | 0.605079 |
Target: 5'- cUGUCggacgcacGCGGGGCCCgGCCG-CGAc -3' miRNA: 3'- aACGGaaa-----CGUCCUGGGgCGGCuGCU- -5' |
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23698 | 3' | -59 | NC_005261.1 | + | 67369 | 0.68 | 0.615275 |
Target: 5'- -cGCCg--GCAGcGCCaCCGCCG-CGAa -3' miRNA: 3'- aaCGGaaaCGUCcUGG-GGCGGCuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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