miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 29133 0.66 0.746008
Target:  5'- -cGCCg--GgGGGcGCCCCGCCGGa-- -3'
miRNA:   3'- aaCGGaaaCgUCC-UGGGGCGGCUgcu -5'
23698 3' -59 NC_005261.1 + 29267 0.67 0.676443
Target:  5'- -cGCCgcUGgAGGGCCCgcUGCUGACGc -3'
miRNA:   3'- aaCGGaaACgUCCUGGG--GCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 30215 0.66 0.716608
Target:  5'- -gGCCgcgcugGCGGcgcgaaccguGGCCCCGCUGGCGc -3'
miRNA:   3'- aaCGGaaa---CGUC----------CUGGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 31003 0.66 0.755621
Target:  5'- -gGCCgggGCcaGGGGCCCggCGCCGGCc- -3'
miRNA:   3'- aaCGGaaaCG--UCCUGGG--GCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 31100 0.71 0.439826
Target:  5'- aUGCCgcc-CGGcGGCCCCGCCGcCGAc -3'
miRNA:   3'- aACGGaaacGUC-CUGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 31307 0.66 0.746008
Target:  5'- -cGCCgc-GCGGGGCCC-GCgGGCGc -3'
miRNA:   3'- aaCGGaaaCGUCCUGGGgCGgCUGCu -5'
23698 3' -59 NC_005261.1 + 31926 0.66 0.755621
Target:  5'- -cGCCgccGCuGGGCUCUGCCG-CGGc -3'
miRNA:   3'- aaCGGaaaCGuCCUGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 32420 0.7 0.505312
Target:  5'- -cGCCggcGaCGGGAgCCCCGCCGGCc- -3'
miRNA:   3'- aaCGGaaaC-GUCCU-GGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 34326 0.66 0.733363
Target:  5'- -gGCCga---GGGGCCCCaaggggccggggcgGCCGACGGg -3'
miRNA:   3'- aaCGGaaacgUCCUGGGG--------------CGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 35674 0.7 0.476688
Target:  5'- cUGCCggccGCAc--CCCCGCCGGCGAg -3'
miRNA:   3'- aACGGaaa-CGUccuGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 36568 0.69 0.57464
Target:  5'- -aGCCgagcugaGCGGGGgCCCGCCG-CGGc -3'
miRNA:   3'- aaCGGaaa----CGUCCUgGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 37449 0.7 0.520878
Target:  5'- -cGCCgaagauauaagGCGGGugCUCGCCGGCa- -3'
miRNA:   3'- aaCGGaaa--------CGUCCugGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 40061 0.66 0.726492
Target:  5'- -gGCCcgUGCuGGAgcacgaggguCCCCGCUGGCa- -3'
miRNA:   3'- aaCGGaaACGuCCU----------GGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 42112 0.67 0.676443
Target:  5'- gUGCCggcccaGCAGcccGGCCUCGUCGAUGAc -3'
miRNA:   3'- aACGGaaa---CGUC---CUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 42210 0.75 0.25134
Target:  5'- -cGCCgc-GCGGGcGCCCCGCCG-CGAg -3'
miRNA:   3'- aaCGGaaaCGUCC-UGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 42666 0.66 0.716608
Target:  5'- -aGCCaagcggcgGCcGGGCCgCCGCCGGCa- -3'
miRNA:   3'- aaCGGaaa-----CGuCCUGG-GGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 43412 0.68 0.635698
Target:  5'- -cGCCggggGCGGccuCCgCCGCCGGCGGg -3'
miRNA:   3'- aaCGGaaa-CGUCcu-GG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 51970 0.67 0.696633
Target:  5'- -cGCCgcgcUGCuGGACCgcggcgccgCCGCCGACu- -3'
miRNA:   3'- aaCGGaa--ACGuCCUGG---------GGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 60152 0.66 0.726492
Target:  5'- -aGgCgcUGCAGGcGCCgCUGCCGugGAa -3'
miRNA:   3'- aaCgGaaACGUCC-UGG-GGCGGCugCU- -5'
23698 3' -59 NC_005261.1 + 61417 0.66 0.726492
Target:  5'- -gGCCUc-GCAGGACCUggccuCGCUGACc- -3'
miRNA:   3'- aaCGGAaaCGUCCUGGG-----GCGGCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.