miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 8 0.7 0.515018
Target:  5'- -cGCCccucgUGCAgcGGGCCCCGCgCGACc- -3'
miRNA:   3'- aaCGGaa---ACGU--CCUGGGGCG-GCUGcu -5'
23698 3' -59 NC_005261.1 + 1199 0.67 0.656109
Target:  5'- -gGCCgggcgcgGCGcGGAccCCCCGCCGAUGc -3'
miRNA:   3'- aaCGGaaa----CGU-CCU--GGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 1291 0.73 0.347531
Target:  5'- -gGCCg--GCGGGGCUCCcgucGCCGGCGGc -3'
miRNA:   3'- aaCGGaaaCGUCCUGGGG----CGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 2408 0.71 0.439826
Target:  5'- -cGCCc--GCGGG-CCCCGCgCGGCGGc -3'
miRNA:   3'- aaCGGaaaCGUCCuGGGGCG-GCUGCU- -5'
23698 3' -59 NC_005261.1 + 2769 0.66 0.736295
Target:  5'- -gGCCUcgagGCccgcccccgaGGGGCUgCCGCCGGCGGc -3'
miRNA:   3'- aaCGGAaa--CG----------UCCUGG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 5115 0.66 0.746008
Target:  5'- -cGCCagcucgGCGcGGGCggCCCGCCGGCGc -3'
miRNA:   3'- aaCGGaaa---CGU-CCUG--GGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 9316 0.71 0.458059
Target:  5'- -aGCCcc--CAGGACCgccccgCCGCCGACGAg -3'
miRNA:   3'- aaCGGaaacGUCCUGG------GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 9344 0.68 0.594903
Target:  5'- -aGCCcac-CGGGAgCaCCGCCGACGAu -3'
miRNA:   3'- aaCGGaaacGUCCUgG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 9501 1.06 0.001848
Target:  5'- aUUGCCUUUGCAGGACCCCGCCGACGAu -3'
miRNA:   3'- -AACGGAAACGUCCUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 10515 0.69 0.57464
Target:  5'- -cGCCgcUGCGGG-CCCCG-CGGCGc -3'
miRNA:   3'- aaCGGaaACGUCCuGGGGCgGCUGCu -5'
23698 3' -59 NC_005261.1 + 11907 0.7 0.524799
Target:  5'- -cGCCgcggGCccGGCCCgGCCGGCGGc -3'
miRNA:   3'- aaCGGaaa-CGucCUGGGgCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 14067 0.67 0.696633
Target:  5'- -gGCCgcgucCAGGGCCaCGUCGGCGAa -3'
miRNA:   3'- aaCGGaaac-GUCCUGGgGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 16044 0.68 0.605079
Target:  5'- -cGCCUUcuuggGCAgcGGGCCCgCGCCGAgcCGGc -3'
miRNA:   3'- aaCGGAAa----CGU--CCUGGG-GCGGCU--GCU- -5'
23698 3' -59 NC_005261.1 + 16406 0.67 0.696633
Target:  5'- -cGCCgggcggUGCGGGagagGCCCCcUCGACGGc -3'
miRNA:   3'- aaCGGaa----ACGUCC----UGGGGcGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 17561 0.68 0.605079
Target:  5'- -cGCCguucgGCGGuGGCCuuGCgGGCGAg -3'
miRNA:   3'- aaCGGaaa--CGUC-CUGGggCGgCUGCU- -5'
23698 3' -59 NC_005261.1 + 18659 0.66 0.746008
Target:  5'- -gGUCUcggGCGGG-CCCCaGCgGGCGAa -3'
miRNA:   3'- aaCGGAaa-CGUCCuGGGG-CGgCUGCU- -5'
23698 3' -59 NC_005261.1 + 19858 0.71 0.458059
Target:  5'- -gGCUUccucgcGCGaGACCCCGCCGGCGGg -3'
miRNA:   3'- aaCGGAaa----CGUcCUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 22683 0.67 0.656109
Target:  5'- gUGCCgccGgGGGACgggCCCGgCGACGAg -3'
miRNA:   3'- aACGGaaaCgUCCUG---GGGCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 28592 0.66 0.706652
Target:  5'- -cGCCg--GCGGGccGCCCgCGCCGAg-- -3'
miRNA:   3'- aaCGGaaaCGUCC--UGGG-GCGGCUgcu -5'
23698 3' -59 NC_005261.1 + 28660 0.67 0.645909
Target:  5'- -gGCCg--GCGGGGCCgaCGaCGACGAg -3'
miRNA:   3'- aaCGGaaaCGUCCUGGg-GCgGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.