miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 137692 0.7 0.515018
Target:  5'- -cGCCccucgUGCAgcGGGCCCCGCgCGACc- -3'
miRNA:   3'- aaCGGaa---ACGU--CCUGGGGCG-GCUGcu -5'
23698 3' -59 NC_005261.1 + 135560 0.67 0.686561
Target:  5'- cUGCCccUGCgcaccaAGGACCCCaucguggccacgGCCGGCGc -3'
miRNA:   3'- aACGGaaACG------UCCUGGGG------------CGGCUGCu -5'
23698 3' -59 NC_005261.1 + 134362 0.67 0.686561
Target:  5'- -cGCCgc-GCGGGgggcgGCgCCGCUGGCGAc -3'
miRNA:   3'- aaCGGaaaCGUCC-----UGgGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 130485 0.73 0.347531
Target:  5'- gUGCCUcgGCggcgAGGGCCCCGaCGACGu -3'
miRNA:   3'- aACGGAaaCG----UCCUGGGGCgGCUGCu -5'
23698 3' -59 NC_005261.1 + 129709 0.67 0.676443
Target:  5'- -gGCCggagGCAGG--CCCGCCGGCu- -3'
miRNA:   3'- aaCGGaaa-CGUCCugGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 129631 0.66 0.736295
Target:  5'- -cGCCUUUGCAGGcgGCaaCGgUGGCGGc -3'
miRNA:   3'- aaCGGAAACGUCC--UGggGCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 127727 0.67 0.645909
Target:  5'- cUGCCUgguaGCGGGAgCuuGgCGGCGGg -3'
miRNA:   3'- aACGGAaa--CGUCCUgGggCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 127306 0.7 0.495686
Target:  5'- -cGCCggcuggcgGUGGGGCCCUGCCGcccGCGGg -3'
miRNA:   3'- aaCGGaaa-----CGUCCUGGGGCGGC---UGCU- -5'
23698 3' -59 NC_005261.1 + 123243 0.72 0.413272
Target:  5'- -cGCCcagGCGcGGGCCCCGCCcaucgcccguGACGAg -3'
miRNA:   3'- aaCGGaaaCGU-CCUGGGGCGG----------CUGCU- -5'
23698 3' -59 NC_005261.1 + 122989 0.66 0.746008
Target:  5'- -gGCCUccUGCAGGGCCaCUacgGCCG-CGGc -3'
miRNA:   3'- aaCGGAa-ACGUCCUGG-GG---CGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 121630 0.7 0.505312
Target:  5'- -cGCCgcu-CGGcGGCCgCCGCCGGCGAg -3'
miRNA:   3'- aaCGGaaacGUC-CUGG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 121371 0.67 0.686561
Target:  5'- -cGCgUacUGCAGGcGCCCCGCggCGGCGGc -3'
miRNA:   3'- aaCGgAa-ACGUCC-UGGGGCG--GCUGCU- -5'
23698 3' -59 NC_005261.1 + 119540 0.7 0.505312
Target:  5'- -gGCCga-GCAaGGCCCCGCCG-CGGg -3'
miRNA:   3'- aaCGGaaaCGUcCUGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 119280 0.7 0.524799
Target:  5'- -cGCUgg-GCGGGGgCUCGCCGAgGAa -3'
miRNA:   3'- aaCGGaaaCGUCCUgGGGCGGCUgCU- -5'
23698 3' -59 NC_005261.1 + 119005 0.78 0.161058
Target:  5'- -gGCC--UGCuGGGCCCgCGCCGACGAa -3'
miRNA:   3'- aaCGGaaACGuCCUGGG-GCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 118513 0.68 0.625484
Target:  5'- -cGCCgcucgGCgAGGcgcccuGCCCCGCCGACc- -3'
miRNA:   3'- aaCGGaaa--CG-UCC------UGGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 118021 0.68 0.605079
Target:  5'- cUGUCggacgcacGCGGGGCCCgGCCG-CGAc -3'
miRNA:   3'- aACGGaaa-----CGUCCUGGGgCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 117589 0.69 0.57464
Target:  5'- -cGCCgcUGUc-GAUCCUGCCGACGAu -3'
miRNA:   3'- aaCGGaaACGucCUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 113305 0.66 0.716608
Target:  5'- cUGCCgcggGCcuGGGCCCgGCUGcGCGAg -3'
miRNA:   3'- aACGGaaa-CGu-CCUGGGgCGGC-UGCU- -5'
23698 3' -59 NC_005261.1 + 112060 0.66 0.736295
Target:  5'- -gGCCUU--CGGGcguGCCCuCGUCGGCGAg -3'
miRNA:   3'- aaCGGAAacGUCC---UGGG-GCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.