miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 9501 1.06 0.001848
Target:  5'- aUUGCCUUUGCAGGACCCCGCCGACGAu -3'
miRNA:   3'- -AACGGAAACGUCCUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 119005 0.78 0.161058
Target:  5'- -gGCC--UGCuGGGCCCgCGCCGACGAa -3'
miRNA:   3'- aaCGGaaACGuCCUGGG-GCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 42210 0.75 0.25134
Target:  5'- -cGCCgc-GCGGGcGCCCCGCCG-CGAg -3'
miRNA:   3'- aaCGGaaaCGUCC-UGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 90373 0.74 0.317579
Target:  5'- -cGCUcgUGCGcGGcgagGCCCCGCCGGCGGg -3'
miRNA:   3'- aaCGGaaACGU-CC----UGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 76670 0.73 0.324881
Target:  5'- -cGCCg-UGCuGGcCCUCGCCGACGAc -3'
miRNA:   3'- aaCGGaaACGuCCuGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 1291 0.73 0.347531
Target:  5'- -gGCCg--GCGGGGCUCCcgucGCCGGCGGc -3'
miRNA:   3'- aaCGGaaaCGUCCUGGGG----CGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 130485 0.73 0.347531
Target:  5'- gUGCCUcgGCggcgAGGGCCCCGaCGACGu -3'
miRNA:   3'- aACGGAaaCG----UCCUGGGGCgGCUGCu -5'
23698 3' -59 NC_005261.1 + 68271 0.72 0.377807
Target:  5'- -cGCCUgcgcccgcgcgGCGGGGCCCCGgCCG-CGGg -3'
miRNA:   3'- aaCGGAaa---------CGUCCUGGGGC-GGCuGCU- -5'
23698 3' -59 NC_005261.1 + 110623 0.72 0.413272
Target:  5'- -aGCUgcgGCuGGAgCCCGCCGGCGu -3'
miRNA:   3'- aaCGGaaaCGuCCUgGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 123243 0.72 0.413272
Target:  5'- -cGCCcagGCGcGGGCCCCGCCcaucgcccguGACGAg -3'
miRNA:   3'- aaCGGaaaCGU-CCUGGGGCGG----------CUGCU- -5'
23698 3' -59 NC_005261.1 + 62928 0.71 0.430866
Target:  5'- -aGCCcaccgGCAGGcaGCCCCGCacCGGCGAg -3'
miRNA:   3'- aaCGGaaa--CGUCC--UGGGGCG--GCUGCU- -5'
23698 3' -59 NC_005261.1 + 88798 0.71 0.430866
Target:  5'- -cGCCgcgcaGCAGGACgCCGgCGGCGGg -3'
miRNA:   3'- aaCGGaaa--CGUCCUGgGGCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 2408 0.71 0.439826
Target:  5'- -cGCCc--GCGGG-CCCCGCgCGGCGGc -3'
miRNA:   3'- aaCGGaaaCGUCCuGGGGCG-GCUGCU- -5'
23698 3' -59 NC_005261.1 + 31100 0.71 0.439826
Target:  5'- aUGCCgcc-CGGcGGCCCCGCCGcCGAc -3'
miRNA:   3'- aACGGaaacGUC-CUGGGGCGGCuGCU- -5'
23698 3' -59 NC_005261.1 + 9316 0.71 0.458059
Target:  5'- -aGCCcc--CAGGACCgccccgCCGCCGACGAg -3'
miRNA:   3'- aaCGGaaacGUCCUGG------GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 19858 0.71 0.458059
Target:  5'- -gGCUUccucgcGCGaGACCCCGCCGGCGGg -3'
miRNA:   3'- aaCGGAaa----CGUcCUGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 35674 0.7 0.476688
Target:  5'- cUGCCggccGCAc--CCCCGCCGGCGAg -3'
miRNA:   3'- aACGGaaa-CGUccuGGGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 80797 0.7 0.476688
Target:  5'- gUGCCcgUGCGGuagaGCCCCGCCGAg-- -3'
miRNA:   3'- aACGGaaACGUCc---UGGGGCGGCUgcu -5'
23698 3' -59 NC_005261.1 + 127306 0.7 0.495686
Target:  5'- -cGCCggcuggcgGUGGGGCCCUGCCGcccGCGGg -3'
miRNA:   3'- aaCGGaaa-----CGUCCUGGGGCGGC---UGCU- -5'
23698 3' -59 NC_005261.1 + 119540 0.7 0.505312
Target:  5'- -gGCCga-GCAaGGCCCCGCCG-CGGg -3'
miRNA:   3'- aaCGGaaaCGUcCUGGGGCGGCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.