miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 3' -59 NC_005261.1 + 71618 0.66 0.755621
Target:  5'- -gGCCcggGCGcGGGCCCgGgCGGCGGg -3'
miRNA:   3'- aaCGGaaaCGU-CCUGGGgCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 112060 0.66 0.736295
Target:  5'- -gGCCUU--CGGGcguGCCCuCGUCGGCGAg -3'
miRNA:   3'- aaCGGAAacGUCC---UGGG-GCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 60152 0.66 0.726492
Target:  5'- -aGgCgcUGCAGGcGCCgCUGCCGugGAa -3'
miRNA:   3'- aaCgGaaACGUCC-UGG-GGCGGCugCU- -5'
23698 3' -59 NC_005261.1 + 30215 0.66 0.716608
Target:  5'- -gGCCgcgcugGCGGcgcgaaccguGGCCCCGCUGGCGc -3'
miRNA:   3'- aaCGGaaa---CGUC----------CUGGGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 18659 0.66 0.746008
Target:  5'- -gGUCUcggGCGGG-CCCCaGCgGGCGAa -3'
miRNA:   3'- aaCGGAaa-CGUCCuGGGG-CGgCUGCU- -5'
23698 3' -59 NC_005261.1 + 42666 0.66 0.716608
Target:  5'- -aGCCaagcggcgGCcGGGCCgCCGCCGGCa- -3'
miRNA:   3'- aaCGGaaa-----CGuCCUGG-GGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 2769 0.66 0.736295
Target:  5'- -gGCCUcgagGCccgcccccgaGGGGCUgCCGCCGGCGGc -3'
miRNA:   3'- aaCGGAaa--CG----------UCCUGG-GGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 40061 0.66 0.726492
Target:  5'- -gGCCcgUGCuGGAgcacgaggguCCCCGCUGGCa- -3'
miRNA:   3'- aaCGGaaACGuCCU----------GGGGCGGCUGcu -5'
23698 3' -59 NC_005261.1 + 5115 0.66 0.746008
Target:  5'- -cGCCagcucgGCGcGGGCggCCCGCCGGCGc -3'
miRNA:   3'- aaCGGaaa---CGU-CCUG--GGGCGGCUGCu -5'
23698 3' -59 NC_005261.1 + 98304 0.66 0.736295
Target:  5'- -gGCCUcggggGCGGGcGCCgCCGCCaGCGGc -3'
miRNA:   3'- aaCGGAaa---CGUCC-UGG-GGCGGcUGCU- -5'
23698 3' -59 NC_005261.1 + 28592 0.66 0.706652
Target:  5'- -cGCCg--GCGGGccGCCCgCGCCGAg-- -3'
miRNA:   3'- aaCGGaaaCGUCC--UGGG-GCGGCUgcu -5'
23698 3' -59 NC_005261.1 + 34326 0.66 0.733363
Target:  5'- -gGCCga---GGGGCCCCaaggggccggggcgGCCGACGGg -3'
miRNA:   3'- aaCGGaaacgUCCUGGGG--------------CGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 61531 0.66 0.716608
Target:  5'- -gGCCUUcuccgGCAagcgccGcGGCgCCGCCGACGAu -3'
miRNA:   3'- aaCGGAAa----CGU------C-CUGgGGCGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 68131 0.66 0.736295
Target:  5'- -gGCCgcggcGCGGcGACCgCGCCGugGc -3'
miRNA:   3'- aaCGGaaa--CGUC-CUGGgGCGGCugCu -5'
23698 3' -59 NC_005261.1 + 87499 0.66 0.716608
Target:  5'- gUGCUggcgcGCAGGcGCUcgCCGCCGugGAa -3'
miRNA:   3'- aACGGaaa--CGUCC-UGG--GGCGGCugCU- -5'
23698 3' -59 NC_005261.1 + 62529 0.66 0.736295
Target:  5'- -cGCCgcgcgGCAuGGGCCCCacGCCGA-GAg -3'
miRNA:   3'- aaCGGaaa--CGU-CCUGGGG--CGGCUgCU- -5'
23698 3' -59 NC_005261.1 + 129631 0.66 0.736295
Target:  5'- -cGCCUUUGCAGGcgGCaaCGgUGGCGGc -3'
miRNA:   3'- aaCGGAAACGUCC--UGggGCgGCUGCU- -5'
23698 3' -59 NC_005261.1 + 113305 0.66 0.716608
Target:  5'- cUGCCgcggGCcuGGGCCCgGCUGcGCGAg -3'
miRNA:   3'- aACGGaaa-CGu-CCUGGGgCGGC-UGCU- -5'
23698 3' -59 NC_005261.1 + 74415 0.66 0.720571
Target:  5'- -gGCCgcggGCGGGagggccgaggagagcGCCCCcCCGGCGGg -3'
miRNA:   3'- aaCGGaaa-CGUCC---------------UGGGGcGGCUGCU- -5'
23698 3' -59 NC_005261.1 + 61417 0.66 0.726492
Target:  5'- -gGCCUc-GCAGGACCUggccuCGCUGACc- -3'
miRNA:   3'- aaCGGAaaCGUCCUGGG-----GCGGCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.