miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 1218 0.7 0.414811
Target:  5'- cCCcCGCCGAUGccgccgucgccGgCCCCgGGAAGCCc -3'
miRNA:   3'- -GGaGCGGCUGC-----------UgGGGGgCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 76681 0.7 0.423159
Target:  5'- cCCUCGCCGACGACgaCgCCG---GCCUg -3'
miRNA:   3'- -GGAGCGGCUGCUGg-GgGGCcuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 87946 0.7 0.423159
Target:  5'- gCCgcgCGCCGccACGGCCCgCCGGcGGCg- -3'
miRNA:   3'- -GGa--GCGGC--UGCUGGGgGGCCuUCGga -5'
23698 5' -62.4 NC_005261.1 + 98810 0.7 0.431607
Target:  5'- -gUCGCCGGCGGCgUgCCGGAAGaCg -3'
miRNA:   3'- ggAGCGGCUGCUGgGgGGCCUUCgGa -5'
23698 5' -62.4 NC_005261.1 + 31264 0.7 0.431607
Target:  5'- gCUCGCCuuCGACCCCgaGGcgcuGGCCg -3'
miRNA:   3'- gGAGCGGcuGCUGGGGggCCu---UCGGa -5'
23698 5' -62.4 NC_005261.1 + 5050 0.7 0.431607
Target:  5'- cCCUCGUCGucguCGGCCCCgCCGGccucGUCa -3'
miRNA:   3'- -GGAGCGGCu---GCUGGGG-GGCCuu--CGGa -5'
23698 5' -62.4 NC_005261.1 + 34943 0.7 0.431607
Target:  5'- ---gGCCGgcGCGACCCgggCCCGGcGGCCUg -3'
miRNA:   3'- ggagCGGC--UGCUGGG---GGGCCuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 56297 0.69 0.438436
Target:  5'- gUUCGCCGccACGGCCUCCCGccugcuacugacGAGCCUg -3'
miRNA:   3'- gGAGCGGC--UGCUGGGGGGCc-----------UUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 131634 0.69 0.440153
Target:  5'- cCCgccgCGaggaCCGACGGgCCCCCCGGgcGCa- -3'
miRNA:   3'- -GGa---GC----GGCUGCU-GGGGGGCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 33741 0.69 0.440153
Target:  5'- cCCUCGCgCGGCGccggggccggGCCCgCUCGcGggGCCc -3'
miRNA:   3'- -GGAGCG-GCUGC----------UGGG-GGGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 32415 0.69 0.448794
Target:  5'- gCCgcCGCCGGCGACgggagCCCCGccGGCCUg -3'
miRNA:   3'- -GGa-GCGGCUGCUGg----GGGGCcuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 119535 0.69 0.448794
Target:  5'- cCCgcgGCCGAgcaaGGCCCCgCCGcGggGCCg -3'
miRNA:   3'- -GGag-CGGCUg---CUGGGG-GGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 56212 0.69 0.457528
Target:  5'- aCUUCGCCGucGCGGCCCCCaagc-GCCa -3'
miRNA:   3'- -GGAGCGGC--UGCUGGGGGgccuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 101910 0.69 0.466353
Target:  5'- uCCUCgaaaGCCG-CGugCCCCCGGcGGUa- -3'
miRNA:   3'- -GGAG----CGGCuGCugGGGGGCCuUCGga -5'
23698 5' -62.4 NC_005261.1 + 37470 0.69 0.466353
Target:  5'- gCUCGCCGGC-ACCCCggcguaUCGGGacuuGGCCg -3'
miRNA:   3'- gGAGCGGCUGcUGGGG------GGCCU----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 92219 0.69 0.475264
Target:  5'- gCCggCGUCGuCGGCCCCgCCgagcgcgcggauGGAGGCCa -3'
miRNA:   3'- -GGa-GCGGCuGCUGGGG-GG------------CCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 95103 0.69 0.475264
Target:  5'- gCCgauGCCGAgGGCuCCuCCCGG-AGCCUc -3'
miRNA:   3'- -GGag-CGGCUgCUG-GG-GGGCCuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 11022 0.69 0.475264
Target:  5'- gCCUCGUCGcCGGgcccgUCCCCCGGcGGCaCUc -3'
miRNA:   3'- -GGAGCGGCuGCU-----GGGGGGCCuUCG-GA- -5'
23698 5' -62.4 NC_005261.1 + 69244 0.69 0.475264
Target:  5'- gUUCGCCGAggcgcUGGCCcgcgccgaCCCCGGcGAGCCg -3'
miRNA:   3'- gGAGCGGCU-----GCUGG--------GGGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 79655 0.69 0.475264
Target:  5'- uCCUCGCCGAgcUGGCCCUCCaccGGCUc -3'
miRNA:   3'- -GGAGCGGCU--GCUGGGGGGccuUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.