miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 94 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 46776 0.71 0.490357
Target:  5'- gGAGCGag--GgCUUGAGCCCCGGGCg -3'
miRNA:   3'- aUUCGCgcgaUgGAGCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 83894 0.71 0.490357
Target:  5'- cUGAGCGCGggGCCgcCGGGCUCgGGACc -3'
miRNA:   3'- -AUUCGCGCgaUGGa-GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 119658 0.71 0.500026
Target:  5'- -cGGCGCGC-GCCUgGAGCUCUGGu- -3'
miRNA:   3'- auUCGCGCGaUGGAgCUCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 120327 0.71 0.500026
Target:  5'- gAGGCGCGCUGCgU----CCCCGAGCg -3'
miRNA:   3'- aUUCGCGCGAUGgAgcucGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 100704 0.71 0.509778
Target:  5'- -cGGCGCGCgccGCC-CGAGCCgCGGccGCg -3'
miRNA:   3'- auUCGCGCGa--UGGaGCUCGGgGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 4159 0.71 0.509778
Target:  5'- cAGGCGCGCcagcUGCaggucCGGGCCCgCGAGCu -3'
miRNA:   3'- aUUCGCGCG----AUGga---GCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 12722 0.71 0.51961
Target:  5'- cGGGCGCGCggGCC-CGccGGCCCCcuGGGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGaGC--UCGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 44468 0.71 0.51961
Target:  5'- gGAGCugcuGCGCUGCUUCaAGCuggCCCGGACg -3'
miRNA:   3'- aUUCG----CGCGAUGGAGcUCG---GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 74091 0.71 0.51961
Target:  5'- --uGUGCGCgACCUCGcccCCCCGGGCc -3'
miRNA:   3'- auuCGCGCGaUGGAGCuc-GGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92161 0.71 0.51961
Target:  5'- cGAGCGCGC-GCUcggUgGAGCCgCCGGGCc -3'
miRNA:   3'- aUUCGCGCGaUGG---AgCUCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 94609 0.71 0.51961
Target:  5'- cGAGCGCGCgcCCUCGccGCCgCCGGc- -3'
miRNA:   3'- aUUCGCGCGauGGAGCu-CGG-GGCUug -5'
23699 3' -57.7 NC_005261.1 + 129373 0.71 0.51961
Target:  5'- cGGGuCGCGCgGCUUCGGGuCCaCCGGGCu -3'
miRNA:   3'- aUUC-GCGCGaUGGAGCUC-GG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 101900 0.71 0.529515
Target:  5'- --cGCGCGCUccuCCUCGAaagccgcguGCCCCcGGCg -3'
miRNA:   3'- auuCGCGCGAu--GGAGCU---------CGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 102255 0.71 0.529515
Target:  5'- --uGCGCGCUcGCCUCcAGCgCCCGGu- -3'
miRNA:   3'- auuCGCGCGA-UGGAGcUCG-GGGCUug -5'
23699 3' -57.7 NC_005261.1 + 46069 0.71 0.529515
Target:  5'- gAAGgGCGCcGCCUCGuGGCCggacaCGAGCa -3'
miRNA:   3'- aUUCgCGCGaUGGAGC-UCGGg----GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 5589 0.71 0.529515
Target:  5'- cGAGgGCGCccGCCUCGAGgCCCCc--- -3'
miRNA:   3'- aUUCgCGCGa-UGGAGCUC-GGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 76605 0.7 0.539488
Target:  5'- --cGCGCGCUGCCgccCGccGCCCCGcuGCc -3'
miRNA:   3'- auuCGCGCGAUGGa--GCu-CGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 102445 0.7 0.558607
Target:  5'- -cGGCGCGCcgcccgGCCUCGgcgcgcaGGCgCCGGACc -3'
miRNA:   3'- auUCGCGCGa-----UGGAGC-------UCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 51225 0.7 0.559619
Target:  5'- cUGGGCGCGCUagccGCCUgGAcGCUCCaGGCg -3'
miRNA:   3'- -AUUCGCGCGA----UGGAgCU-CGGGGcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.