Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 77223 | 0.7 | 0.484271 |
Target: 5'- uGGCcgggGGGGAGGAGC-CaGAGCGCAg -3' miRNA: 3'- cUCGa---CCCUUCCUCGcGcCUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 30815 | 0.7 | 0.484271 |
Target: 5'- gGAGCUGGGggGGcccGGgGaCGGGGC-CGa -3' miRNA: 3'- -CUCGACCCuuCC---UCgC-GCCUCGuGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 41909 | 0.7 | 0.484271 |
Target: 5'- gGGGUUGGGAuaaggcaggugAGGAcauucuCGCuGGAGCGCACg -3' miRNA: 3'- -CUCGACCCU-----------UCCUc-----GCG-CCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 69744 | 0.7 | 0.484271 |
Target: 5'- aGGCggagGaGGAGGcGAGCGCGGGGgGCGg -3' miRNA: 3'- cUCGa---C-CCUUC-CUCGCGCCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 32081 | 0.7 | 0.484271 |
Target: 5'- -cGCUGGGGcucgGGGAGCcggacuucGCGGAGgGCGa -3' miRNA: 3'- cuCGACCCU----UCCUCG--------CGCCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 81487 | 0.7 | 0.484271 |
Target: 5'- aGAGCaGGGccgcGGcuAGCGCGGcGCGCGCg -3' miRNA: 3'- -CUCGaCCCuu--CC--UCGCGCCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 26315 | 0.7 | 0.493804 |
Target: 5'- aGAGgUGGGAAGGgagauAGUGagaGGGGCGCGg -3' miRNA: 3'- -CUCgACCCUUCC-----UCGCg--CCUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 119280 | 0.69 | 0.503421 |
Target: 5'- -cGCUGGGcGGGGGCucgccgaggaaGCGGAGgGCGa -3' miRNA: 3'- cuCGACCCuUCCUCG-----------CGCCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 74923 | 0.69 | 0.513119 |
Target: 5'- gGGGgaGGGcGAGGAcggggacugcgGCGCGG-GCGCGCu -3' miRNA: 3'- -CUCgaCCC-UUCCU-----------CGCGCCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 62808 | 0.69 | 0.526822 |
Target: 5'- cGGGCUGGGccauaucgccGCGCGGGGCACcgGCg -3' miRNA: 3'- -CUCGACCCuuccu-----CGCGCCUCGUG--UG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 88464 | 0.69 | 0.532737 |
Target: 5'- uGAGCgugUGGGcGGGccgugccGCGcCGGAGCGCGCc -3' miRNA: 3'- -CUCG---ACCCuUCCu------CGC-GCCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 120940 | 0.69 | 0.541653 |
Target: 5'- cGGGCgcGGGAAGGuGgaggcucgcgcccCGCGGGGCGCGu -3' miRNA: 3'- -CUCGa-CCCUUCCuC-------------GCGCCUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 38265 | 0.69 | 0.542647 |
Target: 5'- cAGcCUGGGcuGGGGGCGgcUGGuGCACGCg -3' miRNA: 3'- cUC-GACCCu-UCCUCGC--GCCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 115549 | 0.69 | 0.542647 |
Target: 5'- cGGCUGGuGcAGGuccGUGUGGcAGCACACg -3' miRNA: 3'- cUCGACC-CuUCCu--CGCGCC-UCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 83862 | 0.69 | 0.549619 |
Target: 5'- uGGGCUGGGccgggccggacgccGGGucagcucuGAGCGCGGGGC-CGCc -3' miRNA: 3'- -CUCGACCC--------------UUC--------CUCGCGCCUCGuGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 9632 | 0.69 | 0.552617 |
Target: 5'- gGGGgUGGGGgcuGGGuGgGCGGGGCcCACu -3' miRNA: 3'- -CUCgACCCU---UCCuCgCGCCUCGuGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 24679 | 0.68 | 0.562641 |
Target: 5'- -uGCcGGGAcGGGGgGCGGGuGCAUGCa -3' miRNA: 3'- cuCGaCCCUuCCUCgCGCCU-CGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 54184 | 0.68 | 0.562641 |
Target: 5'- ----aGGGGAGGAGCGCGcaccGGUGCGCc -3' miRNA: 3'- cucgaCCCUUCCUCGCGCc---UCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 17449 | 0.68 | 0.569687 |
Target: 5'- gGGGUUGGGGguAGGGGaaacugcgggcagaCGCGG-GCGCGCc -3' miRNA: 3'- -CUCGACCCU--UCCUC--------------GCGCCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 69517 | 0.68 | 0.572714 |
Target: 5'- cGGGCUGccGGAGcuGGCGCGGgcgcuGGCGCGCg -3' miRNA: 3'- -CUCGAC--CCUUccUCGCGCC-----UCGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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