miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23702 3' -60.5 NC_005261.1 + 7346 1.07 0.001178
Target:  5'- gGAGGAGAGAGGGAGAGGGGAGGAGCAu -3'
miRNA:   3'- -CUCCUCUCUCCCUCUCCCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 493 0.9 0.021293
Target:  5'- aGAGGAGGGAGGGGGAGGGaGAGGGGgGg -3'
miRNA:   3'- -CUCCUCUCUCCCUCUCCC-CUCCUCgU- -5'
23702 3' -60.5 NC_005261.1 + 138164 0.9 0.021293
Target:  5'- aGAGGAGGGAGGGGGAGGGaGAGGGGgGg -3'
miRNA:   3'- -CUCCUCUCUCCCUCUCCC-CUCCUCgU- -5'
23702 3' -60.5 NC_005261.1 + 33128 0.87 0.03371
Target:  5'- cGAacAGAGGGGGAGGGGGGAGGAGCGu -3'
miRNA:   3'- -CUccUCUCUCCCUCUCCCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 32936 0.85 0.049079
Target:  5'- cGGGGGGGGGGcGGGGAGGGGAGGGGa- -3'
miRNA:   3'- -CUCCUCUCUC-CCUCUCCCCUCCUCgu -5'
23702 3' -60.5 NC_005261.1 + 5379 0.84 0.054605
Target:  5'- gGGGGAGGGAGGGAGGGaGGGAG-AGCGa -3'
miRNA:   3'- -CUCCUCUCUCCCUCUC-CCCUCcUCGU- -5'
23702 3' -60.5 NC_005261.1 + 7994 0.83 0.064043
Target:  5'- uGGGAGAgGGGGGAGAGGGGGGcuuGAGCGa -3'
miRNA:   3'- cUCCUCU-CUCCCUCUCCCCUC---CUCGU- -5'
23702 3' -60.5 NC_005261.1 + 57174 0.82 0.079102
Target:  5'- aGAGGAGGGAGuGGggucggcgggaaGGGGGGGGGGGGCGc -3'
miRNA:   3'- -CUCCUCUCUC-CC------------UCUCCCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 90170 0.81 0.08785
Target:  5'- gGAGGcGGAGGGGGGGGacGGGGAGGAcGCAg -3'
miRNA:   3'- -CUCC-UCUCUCCCUCU--CCCCUCCU-CGU- -5'
23702 3' -60.5 NC_005261.1 + 22570 0.81 0.090177
Target:  5'- gGAGGGGAGGGGGAGAgcGGcGGAGGcGGCGc -3'
miRNA:   3'- -CUCCUCUCUCCCUCU--CC-CCUCC-UCGU- -5'
23702 3' -60.5 NC_005261.1 + 24296 0.81 0.090177
Target:  5'- uGGGGGGccaggauGAGGGuGGGGGGGGGGGCAg -3'
miRNA:   3'- -CUCCUCu------CUCCCuCUCCCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 137360 0.8 0.100082
Target:  5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3'
miRNA:   3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 137318 0.8 0.100082
Target:  5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3'
miRNA:   3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 137276 0.8 0.100082
Target:  5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3'
miRNA:   3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 137234 0.8 0.100082
Target:  5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3'
miRNA:   3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 137192 0.8 0.100082
Target:  5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3'
miRNA:   3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 137150 0.8 0.100082
Target:  5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3'
miRNA:   3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 996 0.8 0.100082
Target:  5'- gGAGGAGAcGGGGGcGGGGGGcGGGGGGCGg -3'
miRNA:   3'- -CUCCUCU-CUCCC-UCUCCC-CUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 7182 0.8 0.102714
Target:  5'- -cGGAGAaGGGGGGAGGGGGGGGuGCGc -3'
miRNA:   3'- cuCCUCUcUCCCUCUCCCCUCCU-CGU- -5'
23702 3' -60.5 NC_005261.1 + 5312 0.79 0.126233
Target:  5'- aGAGGAGgaGGAGGGGGuAGGGGAGaGGCGc -3'
miRNA:   3'- -CUCCUC--UCUCCCUC-UCCCCUCcUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.