miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23702 3' -60.5 NC_005261.1 + 493 0.9 0.021293
Target:  5'- aGAGGAGGGAGGGGGAGGGaGAGGGGgGg -3'
miRNA:   3'- -CUCCUCUCUCCCUCUCCC-CUCCUCgU- -5'
23702 3' -60.5 NC_005261.1 + 996 0.8 0.100082
Target:  5'- gGAGGAGAcGGGGGcGGGGGGcGGGGGGCGg -3'
miRNA:   3'- -CUCCUCU-CUCCC-UCUCCC-CUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 5312 0.79 0.126233
Target:  5'- aGAGGAGgaGGAGGGGGuAGGGGAGaGGCGc -3'
miRNA:   3'- -CUCCUC--UCUCCCUC-UCCCCUCcUCGU- -5'
23702 3' -60.5 NC_005261.1 + 5379 0.84 0.054605
Target:  5'- gGGGGAGGGAGGGAGGGaGGGAG-AGCGa -3'
miRNA:   3'- -CUCCUCUCUCCCUCUC-CCCUCcUCGU- -5'
23702 3' -60.5 NC_005261.1 + 5645 0.72 0.317656
Target:  5'- uAGGGGGGGGGGcgggcaacgaGGAGGGaGAGGGGgAg -3'
miRNA:   3'- cUCCUCUCUCCC----------UCUCCC-CUCCUCgU- -5'
23702 3' -60.5 NC_005261.1 + 7133 0.67 0.631092
Target:  5'- aGAGGAGA-AGGaGGAGGaGGAGGAagaugauaugGCAg -3'
miRNA:   3'- -CUCCUCUcUCCcUCUCC-CCUCCU----------CGU- -5'
23702 3' -60.5 NC_005261.1 + 7182 0.8 0.102714
Target:  5'- -cGGAGAaGGGGGGAGGGGGGGGuGCGc -3'
miRNA:   3'- cuCCUCUcUCCCUCUCCCCUCCU-CGU- -5'
23702 3' -60.5 NC_005261.1 + 7293 0.73 0.303606
Target:  5'- cAGGGcAGAGGGAGAGaaGGGGGGAGa- -3'
miRNA:   3'- cUCCUcUCUCCCUCUC--CCCUCCUCgu -5'
23702 3' -60.5 NC_005261.1 + 7346 1.07 0.001178
Target:  5'- gGAGGAGAGAGGGAGAGGGGAGGAGCAu -3'
miRNA:   3'- -CUCCUCUCUCCCUCUCCCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 7994 0.83 0.064043
Target:  5'- uGGGAGAgGGGGGAGAGGGGGGcuuGAGCGa -3'
miRNA:   3'- cUCCUCU-CUCCCUCUCCCCUC---CUCGU- -5'
23702 3' -60.5 NC_005261.1 + 11334 0.77 0.162618
Target:  5'- gGGGGuGGGGAGGGAGGGcaGGGAGGAGa- -3'
miRNA:   3'- -CUCC-UCUCUCCCUCUC--CCCUCCUCgu -5'
23702 3' -60.5 NC_005261.1 + 11383 0.71 0.370626
Target:  5'- -uGGAGGGAGGGAGuguGGGcGGGcGCGg -3'
miRNA:   3'- cuCCUCUCUCCCUCu--CCCcUCCuCGU- -5'
23702 3' -60.5 NC_005261.1 + 11421 0.74 0.26434
Target:  5'- aGAGGAG-GAGGcGGGcGGGGGGGGcGGCGg -3'
miRNA:   3'- -CUCCUCuCUCC-CUC-UCCCCUCC-UCGU- -5'
23702 3' -60.5 NC_005261.1 + 11452 0.68 0.570889
Target:  5'- aGAGGgaaaaagaagcGGAGcGGGcgcGGAGGGGcGGGGCGg -3'
miRNA:   3'- -CUCC-----------UCUCuCCC---UCUCCCCuCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 11798 0.74 0.258211
Target:  5'- aGGGGGGaAGGGGGgcGGAGGGGgaaagagaguGGGGGCGg -3'
miRNA:   3'- -CUCCUC-UCUCCC--UCUCCCC----------UCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 13713 0.68 0.560964
Target:  5'- uGGGGGcGGGGGuGGGGGuGGGGGUg -3'
miRNA:   3'- cUCCUCuCUCCCuCUCCCcUCCUCGu -5'
23702 3' -60.5 NC_005261.1 + 22119 0.73 0.31339
Target:  5'- -cGGAGAGugcgugcgguauacgGcGGGGGGGGGGAaGGGGCAu -3'
miRNA:   3'- cuCCUCUC---------------U-CCCUCUCCCCU-CCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 22570 0.81 0.090177
Target:  5'- gGAGGGGAGGGGGAGAgcGGcGGAGGcGGCGc -3'
miRNA:   3'- -CUCCUCUCUCCCUCU--CC-CCUCC-UCGU- -5'
23702 3' -60.5 NC_005261.1 + 22984 0.67 0.580856
Target:  5'- gGAGGAGgcggcGGAGGaAGAGGGGGgcccGGAGgCGg -3'
miRNA:   3'- -CUCCUC-----UCUCCcUCUCCCCU----CCUC-GU- -5'
23702 3' -60.5 NC_005261.1 + 23636 0.76 0.184156
Target:  5'- cGGGGGucgggcggcuGGaAGGGAGAGGGGAGGAGa- -3'
miRNA:   3'- cUCCUC----------UC-UCCCUCUCCCCUCCUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.