Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23702 | 3' | -60.5 | NC_005261.1 | + | 34784 | 0.66 | 0.691301 |
Target: 5'- -cGGAcucGGAGGGcucGGAGGaGGAGGAGg- -3' miRNA: 3'- cuCCUc--UCUCCC---UCUCC-CCUCCUCgu -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 137150 | 0.8 | 0.100082 |
Target: 5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3' miRNA: 3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 137192 | 0.8 | 0.100082 |
Target: 5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3' miRNA: 3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 137234 | 0.8 | 0.100082 |
Target: 5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3' miRNA: 3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 137276 | 0.8 | 0.100082 |
Target: 5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3' miRNA: 3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 137318 | 0.8 | 0.100082 |
Target: 5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3' miRNA: 3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 137360 | 0.8 | 0.100082 |
Target: 5'- gGAGGAGcGAGGGAGgaggagcgaGGGaGGAGGAGCGa -3' miRNA: 3'- -CUCCUCuCUCCCUC---------UCC-CCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 7182 | 0.8 | 0.102714 |
Target: 5'- -cGGAGAaGGGGGGAGGGGGGGGuGCGc -3' miRNA: 3'- cuCCUCUcUCCCUCUCCCCUCCU-CGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 5312 | 0.79 | 0.126233 |
Target: 5'- aGAGGAGgaGGAGGGGGuAGGGGAGaGGCGc -3' miRNA: 3'- -CUCCUC--UCUCCCUC-UCCCCUCcUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 996 | 0.8 | 0.100082 |
Target: 5'- gGAGGAGAcGGGGGcGGGGGGcGGGGGGCGg -3' miRNA: 3'- -CUCCUCU-CUCCC-UCUCCC-CUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 22570 | 0.81 | 0.090177 |
Target: 5'- gGAGGGGAGGGGGAGAgcGGcGGAGGcGGCGc -3' miRNA: 3'- -CUCCUCUCUCCCUCU--CC-CCUCC-UCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 24296 | 0.81 | 0.090177 |
Target: 5'- uGGGGGGccaggauGAGGGuGGGGGGGGGGGCAg -3' miRNA: 3'- -CUCCUCu------CUCCCuCUCCCCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 493 | 0.9 | 0.021293 |
Target: 5'- aGAGGAGGGAGGGGGAGGGaGAGGGGgGg -3' miRNA: 3'- -CUCCUCUCUCCCUCUCCC-CUCCUCgU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 138164 | 0.9 | 0.021293 |
Target: 5'- aGAGGAGGGAGGGGGAGGGaGAGGGGgGg -3' miRNA: 3'- -CUCCUCUCUCCCUCUCCC-CUCCUCgU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 33128 | 0.87 | 0.03371 |
Target: 5'- cGAacAGAGGGGGAGGGGGGAGGAGCGu -3' miRNA: 3'- -CUccUCUCUCCCUCUCCCCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 32936 | 0.85 | 0.049079 |
Target: 5'- cGGGGGGGGGGcGGGGAGGGGAGGGGa- -3' miRNA: 3'- -CUCCUCUCUC-CCUCUCCCCUCCUCgu -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 5379 | 0.84 | 0.054605 |
Target: 5'- gGGGGAGGGAGGGAGGGaGGGAG-AGCGa -3' miRNA: 3'- -CUCCUCUCUCCCUCUC-CCCUCcUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 7994 | 0.83 | 0.064043 |
Target: 5'- uGGGAGAgGGGGGAGAGGGGGGcuuGAGCGa -3' miRNA: 3'- cUCCUCU-CUCCCUCUCCCCUC---CUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 57174 | 0.82 | 0.079102 |
Target: 5'- aGAGGAGGGAGuGGggucggcgggaaGGGGGGGGGGGGCGc -3' miRNA: 3'- -CUCCUCUCUC-CC------------UCUCCCCUCCUCGU- -5' |
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23702 | 3' | -60.5 | NC_005261.1 | + | 90170 | 0.81 | 0.08785 |
Target: 5'- gGAGGcGGAGGGGGGGGacGGGGAGGAcGCAg -3' miRNA: 3'- -CUCC-UCUCUCCCUCU--CCCCUCCU-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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