miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23704 3' -70.2 NC_005261.1 + 1172 0.66 0.302159
Target:  5'- gCCggCCCGCGCCGCgGCCggggccggggCCggGCGCGg -3'
miRNA:   3'- gGG--GGGCGCGGCGgCGG----------GGggUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 126597 0.66 0.308535
Target:  5'- gCCCaaaaacaggCCCGCGUa-CCGCUcuUCCCGCGCGc -3'
miRNA:   3'- -GGG---------GGGCGCGgcGGCGG--GGGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 71376 0.66 0.302159
Target:  5'- gCCCCagCCGCGCCG-CGaCCCggUACGCGu -3'
miRNA:   3'- -GGGG--GGCGCGGCgGC-GGGggGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 6832 0.66 0.305972
Target:  5'- gCCCCCGCcCCcccccacccacccCCGCCCCauuCACGCu -3'
miRNA:   3'- gGGGGGCGcGGc------------GGCGGGGg--GUGCGc -5'
23704 3' -70.2 NC_005261.1 + 100122 0.66 0.308535
Target:  5'- gCgCCCGCaCCgGCCGCagCCCCCGCuCGg -3'
miRNA:   3'- gGgGGGCGcGG-CGGCG--GGGGGUGcGC- -5'
23704 3' -70.2 NC_005261.1 + 123226 0.66 0.302159
Target:  5'- gCCUgCCGCcuaGCgGCCGCCCag-GCGCGg -3'
miRNA:   3'- -GGGgGGCG---CGgCGGCGGGgggUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 121535 0.66 0.302159
Target:  5'- gCUCCUCGUcgcugucggaGCCGCCGUCCUCgGCGa- -3'
miRNA:   3'- -GGGGGGCG----------CGGCGGCGGGGGgUGCgc -5'
23704 3' -70.2 NC_005261.1 + 93937 0.66 0.308535
Target:  5'- gCCgUCCGCgGgCGCCGCCUCCgG-GCGg -3'
miRNA:   3'- -GGgGGGCG-CgGCGGCGGGGGgUgCGC- -5'
23704 3' -70.2 NC_005261.1 + 132947 0.66 0.302159
Target:  5'- uCCCCgagcgCUGCGCCgacgugGCCGCCUUcgucgCCGCGCa -3'
miRNA:   3'- -GGGG-----GGCGCGG------CGGCGGGG-----GGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 129001 0.66 0.344735
Target:  5'- aCCCggggaaaauuuacaCGUGCgGCUGCCCguagCCUACGCGg -3'
miRNA:   3'- gGGGg-------------GCGCGgCGGCGGG----GGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 106898 0.66 0.308535
Target:  5'- gCgCCUGCGUCGuCCGCgCCgCgGCGCGc -3'
miRNA:   3'- gGgGGGCGCGGC-GGCG-GGgGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 107111 0.66 0.302159
Target:  5'- cCCCCagCCGCGCCaCCGCgCCggcgacggcgCCCACGg- -3'
miRNA:   3'- -GGGG--GGCGCGGcGGCG-GG----------GGGUGCgc -5'
23704 3' -70.2 NC_005261.1 + 66644 0.66 0.302159
Target:  5'- --aCCUGCGUCccgucgGCCGCCUCCUcCGCGa -3'
miRNA:   3'- gggGGGCGCGG------CGGCGGGGGGuGCGC- -5'
23704 3' -70.2 NC_005261.1 + 64130 0.66 0.308535
Target:  5'- -gCCgCGCgGCCGCCagcgcguccugGCCCagCCCGCGCa -3'
miRNA:   3'- ggGGgGCG-CGGCGG-----------CGGG--GGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 49117 0.66 0.302159
Target:  5'- gCUCCUCgaGCGCgGCgGgcgggaCCCCCGCGCGc -3'
miRNA:   3'- -GGGGGG--CGCGgCGgCg-----GGGGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 132794 0.66 0.302159
Target:  5'- gCCCCUuCGCCgaggccaugaGCCGCUaCCUGCGCGa -3'
miRNA:   3'- gGGGGGcGCGG----------CGGCGGgGGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 116348 0.66 0.308535
Target:  5'- uCgCCCCGUGCggguuCGuCCGUgCCgCCGCGCGc -3'
miRNA:   3'- -GgGGGGCGCG-----GC-GGCGgGG-GGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 95041 0.66 0.302159
Target:  5'- gCgCUCgGCGCCGCagacCGCCCUCCGCcauGCa -3'
miRNA:   3'- -GgGGGgCGCGGCG----GCGGGGGGUG---CGc -5'
23704 3' -70.2 NC_005261.1 + 97545 0.66 0.308535
Target:  5'- gCCCCgGCGgUGCCgGCCCgUCCGCcCGg -3'
miRNA:   3'- gGGGGgCGCgGCGG-CGGG-GGGUGcGC- -5'
23704 3' -70.2 NC_005261.1 + 37543 0.66 0.308535
Target:  5'- gUCCgCGCGCCGCuccCGCCgCCgCCAC-CGg -3'
miRNA:   3'- gGGGgGCGCGGCG---GCGG-GG-GGUGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.