miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23704 3' -70.2 NC_005261.1 + 9 0.69 0.190993
Target:  5'- gCCCCUCGUGCaGCgGgCCCC-GCGCGa -3'
miRNA:   3'- -GGGGGGCGCGgCGgCgGGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 114 0.82 0.023984
Target:  5'- gCCgCCCGCGCCGgCGCCgCCCCugGUGc -3'
miRNA:   3'- -GGgGGGCGCGGCgGCGG-GGGGugCGC- -5'
23704 3' -70.2 NC_005261.1 + 192 0.76 0.064345
Target:  5'- gCUCCCggggccagcgGUGCCGCCGCCgCCCCugGUGc -3'
miRNA:   3'- gGGGGG----------CGCGGCGGCGG-GGGGugCGC- -5'
23704 3' -70.2 NC_005261.1 + 660 0.71 0.148404
Target:  5'- gUCCCCgGCGCCGaguCCugGCCCUCCGCGg- -3'
miRNA:   3'- -GGGGGgCGCGGC---GG--CGGGGGGUGCgc -5'
23704 3' -70.2 NC_005261.1 + 793 1.08 0.000241
Target:  5'- cCCCCCCGCGCCGCCGCCCCCCACGCGc -3'
miRNA:   3'- -GGGGGGCGCGGCGGCGGGGGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 1172 0.66 0.302159
Target:  5'- gCCggCCCGCGCCGCgGCCggggccggggCCggGCGCGg -3'
miRNA:   3'- gGG--GGGCGCGGCGgCGG----------GGggUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 1216 0.72 0.117106
Target:  5'- aCCCCCCGCcgaugccGCCGUCGCCggCCCCGgGa- -3'
miRNA:   3'- -GGGGGGCG-------CGGCGGCGG--GGGGUgCgc -5'
23704 3' -70.2 NC_005261.1 + 1336 0.72 0.135187
Target:  5'- gCCgCCGCGCCGCgccugcaccagCGUCUCCCGCGgGc -3'
miRNA:   3'- gGGgGGCGCGGCG-----------GCGGGGGGUGCgC- -5'
23704 3' -70.2 NC_005261.1 + 1584 0.66 0.308535
Target:  5'- gCCCCCagcgguuggcggCGCgguggcugGCCGCCucGCCCUCCGCGa- -3'
miRNA:   3'- -GGGGG------------GCG--------CGGCGG--CGGGGGGUGCgc -5'
23704 3' -70.2 NC_005261.1 + 1638 0.7 0.166574
Target:  5'- gCUCCCCGaGCCccagcGCCGCgCUCUGCGCGg -3'
miRNA:   3'- -GGGGGGCgCGG-----CGGCGgGGGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 2039 0.69 0.190993
Target:  5'- gCCgCCGCGCCGCgGCCagCCgCAgGCa -3'
miRNA:   3'- gGGgGGCGCGGCGgCGGg-GG-GUgCGc -5'
23704 3' -70.2 NC_005261.1 + 2097 0.68 0.223398
Target:  5'- -gUCCCGCGUCGCgagcagcagcaCGCCCUgCGCGCc -3'
miRNA:   3'- ggGGGGCGCGGCG-----------GCGGGGgGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 2208 0.67 0.268326
Target:  5'- gCCCa-GCGCCGCgagcaggugcgagaGCCCgCCGCGCa -3'
miRNA:   3'- gGGGggCGCGGCGg-------------CGGGgGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 2275 0.68 0.238663
Target:  5'- uCCUCgCCgggcgGCGCCGCCagcGCCuCCCCGgGCa -3'
miRNA:   3'- -GGGG-GG-----CGCGGCGG---CGG-GGGGUgCGc -5'
23704 3' -70.2 NC_005261.1 + 3335 0.81 0.029261
Target:  5'- cUCCaCCCGCGCCGCgGCgCCCgGCGCGc -3'
miRNA:   3'- -GGG-GGGCGCGGCGgCGgGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 3375 0.66 0.328278
Target:  5'- gCCgCgaGCGCgGCCGCCagCCGCGCc -3'
miRNA:   3'- -GGgGggCGCGgCGGCGGggGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 3459 0.68 0.23348
Target:  5'- gCCgCCGCGCCGCgCGUCgaguaCCGCGCc -3'
miRNA:   3'- gGGgGGCGCGGCG-GCGGgg---GGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 3507 0.74 0.08401
Target:  5'- gCCgCCaGCGCgGCCGCCUCCaGCGCGg -3'
miRNA:   3'- gGGgGG-CGCGgCGGCGGGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 3817 0.67 0.289711
Target:  5'- gCUCgCGCGCUGCCGCgggCCCGgGCGc -3'
miRNA:   3'- gGGGgGCGCGGCGGCGgg-GGGUgCGC- -5'
23704 3' -70.2 NC_005261.1 + 3912 0.68 0.23814
Target:  5'- gCgCCCGCGCCGCCGgcgccggCCUCCggguaggccauggGCGCGu -3'
miRNA:   3'- gGgGGGCGCGGCGGCg------GGGGG-------------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.