miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23704 3' -70.2 NC_005261.1 + 129001 0.66 0.344735
Target:  5'- aCCCggggaaaauuuacaCGUGCgGCUGCCCguagCCUACGCGg -3'
miRNA:   3'- gGGGg-------------GCGCGgCGGCGGG----GGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 117741 0.81 0.028544
Target:  5'- gCgCUgGCGCCGCCGCCCCCaACGCGa -3'
miRNA:   3'- gGgGGgCGCGGCGGCGGGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 33870 0.81 0.029261
Target:  5'- gCCCCC-CGCCGcCCGCCUCCgGCGCGu -3'
miRNA:   3'- gGGGGGcGCGGC-GGCGGGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 92569 0.81 0.029261
Target:  5'- gCCCCgCGCGCCGCgCGCCCa-CGCGCGa -3'
miRNA:   3'- -GGGGgGCGCGGCG-GCGGGggGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 3335 0.81 0.029261
Target:  5'- cUCCaCCCGCGCCGCgGCgCCCgGCGCGc -3'
miRNA:   3'- -GGG-GGGCGCGGCGgCGgGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 58759 0.8 0.03075
Target:  5'- aCUCCCGCGCCGagagCGCCCCCaGCGCGc -3'
miRNA:   3'- gGGGGGCGCGGCg---GCGGGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 99864 0.8 0.03075
Target:  5'- gCCgCCgCGCGCCGCCGCCgCUCgGCGCGa -3'
miRNA:   3'- -GGgGG-GCGCGGCGGCGG-GGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 49978 0.8 0.03075
Target:  5'- aUCCCCgGCGCCGCCGucgucCCCCCCGagcCGCGc -3'
miRNA:   3'- -GGGGGgCGCGGCGGC-----GGGGGGU---GCGC- -5'
23704 3' -70.2 NC_005261.1 + 131411 0.8 0.032635
Target:  5'- gCCCCCCGcCGCUGCCggcagcggcgccggcGCCCCCCuuGCGc -3'
miRNA:   3'- -GGGGGGC-GCGGCGG---------------CGGGGGGugCGC- -5'
23704 3' -70.2 NC_005261.1 + 78067 0.81 0.025843
Target:  5'- gCCCCCGCGCCggcccaggcGCUGgCCCCCGCGCc -3'
miRNA:   3'- gGGGGGCGCGG---------CGGCgGGGGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 77706 0.81 0.025843
Target:  5'- gCCCCCuCGaCCGCCGCCCCCCAgccaaGCGg -3'
miRNA:   3'- gGGGGGcGC-GGCGGCGGGGGGUg----CGC- -5'
23704 3' -70.2 NC_005261.1 + 137797 0.82 0.023984
Target:  5'- gCCgCCCGCGCCGgCGCCgCCCCugGUGc -3'
miRNA:   3'- -GGgGGGCGCGGCgGCGG-GGGGugCGC- -5'
23704 3' -70.2 NC_005261.1 + 103566 0.87 0.009511
Target:  5'- -gCCCCGUGCCGCCGCCgCCCGCGCc -3'
miRNA:   3'- ggGGGGCGCGGCGGCGGgGGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 129282 0.87 0.009753
Target:  5'- gCCCCCGCGCCGCCccgcccGCCCCCgGCGCc -3'
miRNA:   3'- gGGGGGCGCGGCGG------CGGGGGgUGCGc -5'
23704 3' -70.2 NC_005261.1 + 50798 0.84 0.015694
Target:  5'- gCCCCgGCGCCGCCGCCaugacgggCUCCGCGCGg -3'
miRNA:   3'- gGGGGgCGCGGCGGCGG--------GGGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 91487 0.83 0.020145
Target:  5'- gCCgCCGCgGCCGCCGCCcgCCCCGCGCGc -3'
miRNA:   3'- gGGgGGCG-CGGCGGCGG--GGGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 74444 0.82 0.02171
Target:  5'- cCCCCCCG-GCggggggugggggCGCCGCCCCCgGCGCGg -3'
miRNA:   3'- -GGGGGGCgCG------------GCGGCGGGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 32660 0.82 0.022258
Target:  5'- gCCCCCCGCGCCgcuaacGCCGCCgCCCGcCGCc -3'
miRNA:   3'- -GGGGGGCGCGG------CGGCGGgGGGU-GCGc -5'
23704 3' -70.2 NC_005261.1 + 82413 0.82 0.022258
Target:  5'- gUCCCCCGCGCCGgccCCGCCgUCCGCGCc -3'
miRNA:   3'- -GGGGGGCGCGGC---GGCGGgGGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 114 0.82 0.023984
Target:  5'- gCCgCCCGCGCCGgCGCCgCCCCugGUGc -3'
miRNA:   3'- -GGgGGGCGCGGCgGCGG-GGGGugCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.