Results 1 - 20 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 73588 | 0.66 | 0.872429 |
Target: 5'- aGCgCCGUucACgCGCgCGCGcGCGCCGCGc -3' miRNA: 3'- -CG-GGUAcaUG-GUG-GUGUaCGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 13974 | 0.66 | 0.872429 |
Target: 5'- aGCgCCAUG-GCCugCuuCAUcgcGCGCCGCc -3' miRNA: 3'- -CG-GGUACaUGGugGu-GUA---CGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 103277 | 0.66 | 0.872429 |
Target: 5'- aGCCCcccaGCCGCCGgcgGCGUCGCa -3' miRNA: 3'- -CGGGuacaUGGUGGUguaCGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 25424 | 0.66 | 0.872429 |
Target: 5'- uGUCCAcGgcgGCCGCCAC---CGCCGCc -3' miRNA: 3'- -CGGGUaCa--UGGUGGUGuacGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 123609 | 0.66 | 0.872429 |
Target: 5'- cGCCCcgcgcagGUGCCGcucCCGCAggcUGCGCacgucCGCGg -3' miRNA: 3'- -CGGGua-----CAUGGU---GGUGU---ACGCG-----GCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 70129 | 0.66 | 0.872429 |
Target: 5'- uGCCUGgcgcGCCugCGCccGCGCgGCGg -3' miRNA: 3'- -CGGGUaca-UGGugGUGuaCGCGgCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 67335 | 0.66 | 0.872429 |
Target: 5'- -gCCGUGgGCCAgCCGCc-GCGCgGCGg -3' miRNA: 3'- cgGGUACaUGGU-GGUGuaCGCGgCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 47290 | 0.66 | 0.872429 |
Target: 5'- uGCUCAUGcACgACgACGccgucucgcGCGCCGCGg -3' miRNA: 3'- -CGGGUACaUGgUGgUGUa--------CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 44144 | 0.66 | 0.872429 |
Target: 5'- -aCCAcGaugGCCACggCGCAgggcgGCGCCGCGa -3' miRNA: 3'- cgGGUaCa--UGGUG--GUGUa----CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 40213 | 0.66 | 0.872429 |
Target: 5'- uGUCCuUGgaGCCGCCGgGgGCGCgGCGg -3' miRNA: 3'- -CGGGuACa-UGGUGGUgUaCGCGgCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 8272 | 0.66 | 0.872429 |
Target: 5'- cGCCU-UGgcgaGCCGCCGC--GCGCCGUc -3' miRNA: 3'- -CGGGuACa---UGGUGGUGuaCGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 82435 | 0.66 | 0.872429 |
Target: 5'- uCCCcgGcGCCGggucucCCGCGaGCGCCGCc -3' miRNA: 3'- cGGGuaCaUGGU------GGUGUaCGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 41228 | 0.66 | 0.872429 |
Target: 5'- gGCCCGgccggcuggGUcgcgggcgccgGCCggGCCGCGgccggaaGCGCCGCGg -3' miRNA: 3'- -CGGGUa--------CA-----------UGG--UGGUGUa------CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 31279 | 0.66 | 0.871698 |
Target: 5'- cCCCAgccGcGCCACCGCGccgGCgacggcgcccacgGCCGCGg -3' miRNA: 3'- cGGGUa--CaUGGUGGUGUa--CG-------------CGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 85457 | 0.66 | 0.871698 |
Target: 5'- aGCgCCAgGUGgCGCCagucaaacucggaGCA-GCGCCGCGc -3' miRNA: 3'- -CG-GGUaCAUgGUGG-------------UGUaCGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 108375 | 0.66 | 0.870228 |
Target: 5'- aGCuCCcgGUGCUcucggcugcagcggGCCGCGgccUGCcgGCCGCGg -3' miRNA: 3'- -CG-GGuaCAUGG--------------UGGUGU---ACG--CGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 43386 | 0.66 | 0.869491 |
Target: 5'- cGCCCugcgGggcgggcuauaaaGCCGCCGCcgGCGgCGCu -3' miRNA: 3'- -CGGGua--Ca------------UGGUGGUGuaCGCgGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 862 | 0.66 | 0.869491 |
Target: 5'- cGCCCAUG-GCCACCAagguuggcuugGUGCCa-- -3' miRNA: 3'- -CGGGUACaUGGUGGUgua--------CGCGGcgc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 2946 | 0.66 | 0.865019 |
Target: 5'- cGCCCAg--GCgG-CGCggGCGCUGCGg -3' miRNA: 3'- -CGGGUacaUGgUgGUGuaCGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 5431 | 0.66 | 0.865019 |
Target: 5'- cGCCgaCGUG-GCCGCCuuCGU-CGCCGCGc -3' miRNA: 3'- -CGG--GUACaUGGUGGu-GUAcGCGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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