miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 41228 0.66 0.872429
Target:  5'- gGCCCGgccggcuggGUcgcgggcgccgGCCggGCCGCGgccggaaGCGCCGCGg -3'
miRNA:   3'- -CGGGUa--------CA-----------UGG--UGGUGUa------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 13974 0.66 0.872429
Target:  5'- aGCgCCAUG-GCCugCuuCAUcgcGCGCCGCc -3'
miRNA:   3'- -CG-GGUACaUGGugGu-GUA---CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 103277 0.66 0.872429
Target:  5'- aGCCCcccaGCCGCCGgcgGCGUCGCa -3'
miRNA:   3'- -CGGGuacaUGGUGGUguaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 25424 0.66 0.872429
Target:  5'- uGUCCAcGgcgGCCGCCAC---CGCCGCc -3'
miRNA:   3'- -CGGGUaCa--UGGUGGUGuacGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 123609 0.66 0.872429
Target:  5'- cGCCCcgcgcagGUGCCGcucCCGCAggcUGCGCacgucCGCGg -3'
miRNA:   3'- -CGGGua-----CAUGGU---GGUGU---ACGCG-----GCGC- -5'
23705 3' -56.9 NC_005261.1 + 70129 0.66 0.872429
Target:  5'- uGCCUGgcgcGCCugCGCccGCGCgGCGg -3'
miRNA:   3'- -CGGGUaca-UGGugGUGuaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 67335 0.66 0.872429
Target:  5'- -gCCGUGgGCCAgCCGCc-GCGCgGCGg -3'
miRNA:   3'- cgGGUACaUGGU-GGUGuaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 47290 0.66 0.872429
Target:  5'- uGCUCAUGcACgACgACGccgucucgcGCGCCGCGg -3'
miRNA:   3'- -CGGGUACaUGgUGgUGUa--------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 44144 0.66 0.872429
Target:  5'- -aCCAcGaugGCCACggCGCAgggcgGCGCCGCGa -3'
miRNA:   3'- cgGGUaCa--UGGUG--GUGUa----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 40213 0.66 0.872429
Target:  5'- uGUCCuUGgaGCCGCCGgGgGCGCgGCGg -3'
miRNA:   3'- -CGGGuACa-UGGUGGUgUaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 8272 0.66 0.872429
Target:  5'- cGCCU-UGgcgaGCCGCCGC--GCGCCGUc -3'
miRNA:   3'- -CGGGuACa---UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 82435 0.66 0.872429
Target:  5'- uCCCcgGcGCCGggucucCCGCGaGCGCCGCc -3'
miRNA:   3'- cGGGuaCaUGGU------GGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 73588 0.66 0.872429
Target:  5'- aGCgCCGUucACgCGCgCGCGcGCGCCGCGc -3'
miRNA:   3'- -CG-GGUAcaUG-GUG-GUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 85457 0.66 0.871698
Target:  5'- aGCgCCAgGUGgCGCCagucaaacucggaGCA-GCGCCGCGc -3'
miRNA:   3'- -CG-GGUaCAUgGUGG-------------UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31279 0.66 0.871698
Target:  5'- cCCCAgccGcGCCACCGCGccgGCgacggcgcccacgGCCGCGg -3'
miRNA:   3'- cGGGUa--CaUGGUGGUGUa--CG-------------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108375 0.66 0.870228
Target:  5'- aGCuCCcgGUGCUcucggcugcagcggGCCGCGgccUGCcgGCCGCGg -3'
miRNA:   3'- -CG-GGuaCAUGG--------------UGGUGU---ACG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 43386 0.66 0.869491
Target:  5'- cGCCCugcgGggcgggcuauaaaGCCGCCGCcgGCGgCGCu -3'
miRNA:   3'- -CGGGua--Ca------------UGGUGGUGuaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 862 0.66 0.869491
Target:  5'- cGCCCAUG-GCCACCAagguuggcuugGUGCCa-- -3'
miRNA:   3'- -CGGGUACaUGGUGGUgua--------CGCGGcgc -5'
23705 3' -56.9 NC_005261.1 + 5431 0.66 0.865019
Target:  5'- cGCCgaCGUG-GCCGCCuuCGU-CGCCGCGc -3'
miRNA:   3'- -CGG--GUACaUGGUGGu-GUAcGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 11864 0.66 0.865019
Target:  5'- cGCCCGcgc-CCGCCGCGccucggccacGCGCCGCc -3'
miRNA:   3'- -CGGGUacauGGUGGUGUa---------CGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.