miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 68708 0.65 0.991532
Target:  5'- gGCAUCACGCCgccgucagacgacgAGUAUGCggaCGUCGa -3'
miRNA:   3'- gUGUGGUGCGG--------------UCAUGUGaa-GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 74103 0.66 0.99069
Target:  5'- aGCGCCGCGuCCAgcGUGCGCauguuucgCGUCGcGg -3'
miRNA:   3'- gUGUGGUGC-GGU--CAUGUGaa------GUAGC-C- -5'
23705 5' -51.4 NC_005261.1 + 62232 0.66 0.99069
Target:  5'- gCGCACgACGCCGugGCGCUgCAguacgagCGGg -3'
miRNA:   3'- -GUGUGgUGCGGUcaUGUGAaGUa------GCC- -5'
23705 5' -51.4 NC_005261.1 + 68974 0.66 0.99069
Target:  5'- gACACaCGCGCCGGcGCA--UCA-CGGa -3'
miRNA:   3'- gUGUG-GUGCGGUCaUGUgaAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 70724 0.66 0.99069
Target:  5'- gCGCGCgGCGCCAG-GCGCggugagcgCGUCa- -3'
miRNA:   3'- -GUGUGgUGCGGUCaUGUGaa------GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 109634 0.66 0.99069
Target:  5'- gACGCCGCgGCCGGggGCGCcugggCcgCGGc -3'
miRNA:   3'- gUGUGGUG-CGGUCa-UGUGaa---GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 114775 0.66 0.99069
Target:  5'- -cCGCCGCuGCCGGgGCGCggCggggGUCGGg -3'
miRNA:   3'- guGUGGUG-CGGUCaUGUGaaG----UAGCC- -5'
23705 5' -51.4 NC_005261.1 + 34358 0.66 0.989373
Target:  5'- gCGCGCCGCGCaggaAGUACuGCcgCAgcgccUCGGc -3'
miRNA:   3'- -GUGUGGUGCGg---UCAUG-UGaaGU-----AGCC- -5'
23705 5' -51.4 NC_005261.1 + 106447 0.66 0.989373
Target:  5'- -cCGCgGCGCCAacGUGCGCUaCA-CGGu -3'
miRNA:   3'- guGUGgUGCGGU--CAUGUGAaGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 99846 0.66 0.989373
Target:  5'- gGCACaGCGCCGGcGCGCggcCAUgCGGc -3'
miRNA:   3'- gUGUGgUGCGGUCaUGUGaa-GUA-GCC- -5'
23705 5' -51.4 NC_005261.1 + 110812 0.66 0.989373
Target:  5'- aGCACCGuCGCCGccgacuGUAC-CUUCGUUGc -3'
miRNA:   3'- gUGUGGU-GCGGU------CAUGuGAAGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 33542 0.66 0.989373
Target:  5'- gCGgACCGCGCgGGUcACGCacgCGUCGa -3'
miRNA:   3'- -GUgUGGUGCGgUCA-UGUGaa-GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 29976 0.66 0.989373
Target:  5'- -cCACCGCGCCugcGUGCACggcaaccgCGUCc- -3'
miRNA:   3'- guGUGGUGCGGu--CAUGUGaa------GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 28255 0.66 0.987915
Target:  5'- aCGCACCcCGCCG--ACG--UCAUCGGc -3'
miRNA:   3'- -GUGUGGuGCGGUcaUGUgaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 86512 0.66 0.987915
Target:  5'- aGCGCCGCGCggcagcagCGGcGCGCUaCAUCGc -3'
miRNA:   3'- gUGUGGUGCG--------GUCaUGUGAaGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 3783 0.66 0.987915
Target:  5'- aGCGCCGgGUCuGGUgcgaACGCggCGUCGGa -3'
miRNA:   3'- gUGUGGUgCGG-UCA----UGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 66902 0.66 0.987915
Target:  5'- uGCGCgGCgGCCAgGUGCGCgcgaaaGUCGGc -3'
miRNA:   3'- gUGUGgUG-CGGU-CAUGUGaag---UAGCC- -5'
23705 5' -51.4 NC_005261.1 + 124314 0.66 0.986307
Target:  5'- aGgGCCACGUCGGcgaaGCACUcgcggUCGUCGa -3'
miRNA:   3'- gUgUGGUGCGGUCa---UGUGA-----AGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 18646 0.66 0.986307
Target:  5'- gCGCGCCcCGCCcauGUGCugUUUG-CGGc -3'
miRNA:   3'- -GUGUGGuGCGGu--CAUGugAAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 30877 0.66 0.986307
Target:  5'- gCAgGCCGCGCCGaaggGCAgcgCGUCGGc -3'
miRNA:   3'- -GUgUGGUGCGGUca--UGUgaaGUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.