miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 5' -57.5 NC_005261.1 + 44837 0.66 0.833082
Target:  5'- cCAGUAGCGGucGACg-GCGGUGCggCGg -3'
miRNA:   3'- cGUCGUCGCC--CUGaaCGUCACGgaGC- -5'
23706 5' -57.5 NC_005261.1 + 94127 0.66 0.833082
Target:  5'- cGCGGCGcGCGGGGgg-GCGGgGCC-CGc -3'
miRNA:   3'- -CGUCGU-CGCCCUgaaCGUCaCGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 136670 0.66 0.833082
Target:  5'- cGCGGCGGCacGGGCaccGCGGUGCg-CGg -3'
miRNA:   3'- -CGUCGUCGc-CCUGaa-CGUCACGgaGC- -5'
23706 5' -57.5 NC_005261.1 + 113996 0.66 0.833082
Target:  5'- uCGGCGGCGGGGCgguccUGgGGgcucggauCCUCGg -3'
miRNA:   3'- cGUCGUCGCCCUGa----ACgUCac------GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 120844 0.66 0.833082
Target:  5'- -gGGCGGCGcGGGCccgccguucgGCGGUGgCCUUGc -3'
miRNA:   3'- cgUCGUCGC-CCUGaa--------CGUCAC-GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 40721 0.66 0.824647
Target:  5'- cCGGCGuccGCGGGGCUuggGCGGggcUGCCggggCGg -3'
miRNA:   3'- cGUCGU---CGCCCUGAa--CGUC---ACGGa---GC- -5'
23706 5' -57.5 NC_005261.1 + 38203 0.66 0.824647
Target:  5'- cGUGGCGGCGGGGCagcGUGGcgGCCa-- -3'
miRNA:   3'- -CGUCGUCGCCCUGaa-CGUCa-CGGagc -5'
23706 5' -57.5 NC_005261.1 + 29519 0.66 0.824647
Target:  5'- uGCAGCAGCGGGuggacgACggccGCGcUGCC-CGc -3'
miRNA:   3'- -CGUCGUCGCCC------UGaa--CGUcACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 116567 0.66 0.824647
Target:  5'- --cGCGGCGGGcGCgcgUGCGGgcgGgCUCGc -3'
miRNA:   3'- cguCGUCGCCC-UGa--ACGUCa--CgGAGC- -5'
23706 5' -57.5 NC_005261.1 + 108970 0.66 0.824647
Target:  5'- gGCGGCcGCGGGGCccGCGgccguguucGUGCCg-- -3'
miRNA:   3'- -CGUCGuCGCCCUGaaCGU---------CACGGagc -5'
23706 5' -57.5 NC_005261.1 + 85345 0.66 0.824647
Target:  5'- gGCAGCcGuCGGGAgg-GCAGUGCUcCa -3'
miRNA:   3'- -CGUCGuC-GCCCUgaaCGUCACGGaGc -5'
23706 5' -57.5 NC_005261.1 + 34111 0.66 0.816036
Target:  5'- gGCGGCugcGCGGGcCUcGCAG-GCC-CGc -3'
miRNA:   3'- -CGUCGu--CGCCCuGAaCGUCaCGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 37647 0.66 0.816036
Target:  5'- cGCGGCGGCGcgcGGcacgaGCUUGaAGUagGCCUCGu -3'
miRNA:   3'- -CGUCGUCGC---CC-----UGAACgUCA--CGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 51884 0.66 0.816036
Target:  5'- --uGCGGCaGGGGCUUGCcGU-CCUUGu -3'
miRNA:   3'- cguCGUCG-CCCUGAACGuCAcGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 86017 0.66 0.80637
Target:  5'- cGCGGCGGCGgccccggucgucaGGGCcUGCAG-GUCgUCGa -3'
miRNA:   3'- -CGUCGUCGC-------------CCUGaACGUCaCGG-AGC- -5'
23706 5' -57.5 NC_005261.1 + 40440 0.66 0.798318
Target:  5'- gGCGGCaacgagggaGGUGGcGGCggaGCGGUGCC-CGg -3'
miRNA:   3'- -CGUCG---------UCGCC-CUGaa-CGUCACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 63510 0.66 0.798318
Target:  5'- cGCGGCGGCGGcGGCggagucgGCGGcccgcgcugGCCgcgCGg -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa-----CGUCa--------CGGa--GC- -5'
23706 5' -57.5 NC_005261.1 + 123543 0.66 0.798318
Target:  5'- gGCAGCAgGCGGcGGCgcaucgcGCAGUucGCCaUCGc -3'
miRNA:   3'- -CGUCGU-CGCC-CUGaa-----CGUCA--CGG-AGC- -5'
23706 5' -57.5 NC_005261.1 + 136592 0.66 0.790143
Target:  5'- cGCAGCGGCGGcGCcccgggGUAGagccgcgcguaagcgGCCUCGg -3'
miRNA:   3'- -CGUCGUCGCCcUGaa----CGUCa--------------CGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 80158 0.66 0.789227
Target:  5'- cGCGGCGGCGGGGucCUcgGCcaUGCCgCGc -3'
miRNA:   3'- -CGUCGUCGCCCU--GAa-CGucACGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.