miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 5' -57.5 NC_005261.1 + 331 0.68 0.681848
Target:  5'- gGCGGCGGCGGcGGCggcgGCAGcgGuCCUgGu -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa--CGUCa-C-GGAgC- -5'
23706 5' -57.5 NC_005261.1 + 419 0.67 0.751531
Target:  5'- gGCuGCGGCGGcGGCUgcgGCGGcgGCUgCGg -3'
miRNA:   3'- -CGuCGUCGCC-CUGAa--CGUCa-CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 455 0.67 0.751531
Target:  5'- gGCuGCGGCGGcGGCUgcgGCGGcgGCUgCGg -3'
miRNA:   3'- -CGuCGUCGCC-CUGAa--CGUCa-CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 571 0.67 0.779995
Target:  5'- uGguGCucGCGGGGCUgGCAGgGCUggCGg -3'
miRNA:   3'- -CguCGu-CGCCCUGAaCGUCaCGGa-GC- -5'
23706 5' -57.5 NC_005261.1 + 2941 0.68 0.732011
Target:  5'- -aGGCGGCGcGGGCgcUGCGG-GaCCUCGu -3'
miRNA:   3'- cgUCGUCGC-CCUGa-ACGUCaC-GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 6461 0.69 0.640917
Target:  5'- gGC-GCGcGCGGGACc-GCGGUGCC-CGc -3'
miRNA:   3'- -CGuCGU-CGCCCUGaaCGUCACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 7760 0.7 0.59987
Target:  5'- aCAGCGcGCGGGGCgcGC-GUGCgCUCGc -3'
miRNA:   3'- cGUCGU-CGCCCUGaaCGuCACG-GAGC- -5'
23706 5' -57.5 NC_005261.1 + 8660 0.7 0.610115
Target:  5'- uGCAGCGGCaGGGCg-GCGGgGCC-CGg -3'
miRNA:   3'- -CGUCGUCGcCCUGaaCGUCaCGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 8738 0.68 0.732011
Target:  5'- gGCGGCGGCGGcGGCagggGCGGgaccggggGCgUCGc -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa--CGUCa-------CGgAGC- -5'
23706 5' -57.5 NC_005261.1 + 9582 0.67 0.761137
Target:  5'- --cGCGGCGGGGCUcgcgcUGCGGcUGaCgCUCGc -3'
miRNA:   3'- cguCGUCGCCCUGA-----ACGUC-AC-G-GAGC- -5'
23706 5' -57.5 NC_005261.1 + 10548 0.71 0.539148
Target:  5'- aGCAGCGGaCGGGGCggucGCGGcGCCagGg -3'
miRNA:   3'- -CGUCGUC-GCCCUGaa--CGUCaCGGagC- -5'
23706 5' -57.5 NC_005261.1 + 13363 0.68 0.722116
Target:  5'- aGCAGgcucCGGUGGGGCgcugacucggGCAGgGCCUCu -3'
miRNA:   3'- -CGUC----GUCGCCCUGaa--------CGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 16893 0.72 0.490199
Target:  5'- cGgGGCGGCGGGGCggGCAuGggGCCgUCGa -3'
miRNA:   3'- -CgUCGUCGCCCUGaaCGU-Ca-CGG-AGC- -5'
23706 5' -57.5 NC_005261.1 + 16956 0.72 0.490199
Target:  5'- cGgGGCGGCGGGGCggGCAuGggGCCgUCGa -3'
miRNA:   3'- -CgUCGUCGCCCUGaaCGU-Ca-CGG-AGC- -5'
23706 5' -57.5 NC_005261.1 + 17002 0.69 0.640917
Target:  5'- cGCGGCGGCGGcGCcUGCccgAGUGCgaCGg -3'
miRNA:   3'- -CGUCGUCGCCcUGaACG---UCACGgaGC- -5'
23706 5' -57.5 NC_005261.1 + 20225 0.72 0.480653
Target:  5'- cGUcGCGGCGGGGCUUGCcGUcuggGCCgCGg -3'
miRNA:   3'- -CGuCGUCGCCCUGAACGuCA----CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 28142 0.7 0.579461
Target:  5'- cGCGGCGcccGgGGGGC-UGCGG-GCCUCc -3'
miRNA:   3'- -CGUCGU---CgCCCUGaACGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 28520 0.7 0.58965
Target:  5'- -gGGCAGCGGGGCccGCGGgcgggcGCCcCGg -3'
miRNA:   3'- cgUCGUCGCCCUGaaCGUCa-----CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 29519 0.66 0.824647
Target:  5'- uGCAGCAGCGGGuggacgACggccGCGcUGCC-CGc -3'
miRNA:   3'- -CGUCGUCGCCC------UGaa--CGUcACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 30430 0.72 0.499833
Target:  5'- cGCGGCcGCGGGGCcaUGCAGUGgCggaUCGu -3'
miRNA:   3'- -CGUCGuCGCCCUGa-ACGUCACgG---AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.