miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 5' -57.5 NC_005261.1 + 44710 0.78 0.207987
Target:  5'- gGCGGCgccGGCGGGGCgccgGCgGGUGCCUCu -3'
miRNA:   3'- -CGUCG---UCGCCCUGaa--CG-UCACGGAGc -5'
23706 5' -57.5 NC_005261.1 + 33385 0.78 0.213199
Target:  5'- gGCGGCGGuCGGGGCgccaggGCGGUGuCCUCu -3'
miRNA:   3'- -CGUCGUC-GCCCUGaa----CGUCAC-GGAGc -5'
23706 5' -57.5 NC_005261.1 + 54264 0.77 0.240963
Target:  5'- gGCAGCgGGCGGGgucGCUgGCGG-GCCUCGg -3'
miRNA:   3'- -CGUCG-UCGCCC---UGAaCGUCaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 135968 0.74 0.374152
Target:  5'- cGCGGCGGCGGGccGCgaucucgGcCAGcGCCUCGg -3'
miRNA:   3'- -CGUCGUCGCCC--UGaa-----C-GUCaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 92331 0.73 0.399261
Target:  5'- -gGGCAGCGGGAaggGCGccGCCUCGu -3'
miRNA:   3'- cgUCGUCGCCCUgaaCGUcaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 135645 0.73 0.416589
Target:  5'- cGCcGCGGCGGGcCgucgcgGCGG-GCCUCGa -3'
miRNA:   3'- -CGuCGUCGCCCuGaa----CGUCaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 34524 0.73 0.443421
Target:  5'- gGCGGCGGCGGGGCg-GCGccGCCgggCGg -3'
miRNA:   3'- -CGUCGUCGCCCUGaaCGUcaCGGa--GC- -5'
23706 5' -57.5 NC_005261.1 + 20225 0.72 0.480653
Target:  5'- cGUcGCGGCGGGGCUUGCcGUcuggGCCgCGg -3'
miRNA:   3'- -CGuCGUCGCCCUGAACGuCA----CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 16956 0.72 0.490199
Target:  5'- cGgGGCGGCGGGGCggGCAuGggGCCgUCGa -3'
miRNA:   3'- -CgUCGUCGCCCUGaaCGU-Ca-CGG-AGC- -5'
23706 5' -57.5 NC_005261.1 + 16893 0.72 0.490199
Target:  5'- cGgGGCGGCGGGGCggGCAuGggGCCgUCGa -3'
miRNA:   3'- -CgUCGUCGCCCUGaaCGU-Ca-CGG-AGC- -5'
23706 5' -57.5 NC_005261.1 + 89363 0.72 0.490199
Target:  5'- aGCGGCGGCGGGcACgcGCAGgcaGCCg-- -3'
miRNA:   3'- -CGUCGUCGCCC-UGaaCGUCa--CGGagc -5'
23706 5' -57.5 NC_005261.1 + 30430 0.72 0.499833
Target:  5'- cGCGGCcGCGGGGCcaUGCAGUGgCggaUCGu -3'
miRNA:   3'- -CGUCGuCGCCCUGa-ACGUCACgG---AGC- -5'
23706 5' -57.5 NC_005261.1 + 132879 0.72 0.499833
Target:  5'- cGCGGCAGCGGcGGCgagGCcGccgGCUUCGg -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa-CGuCa--CGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 80709 0.71 0.529212
Target:  5'- cCAGcCGGCGGGGCacagggccaGCAGgGCCUCGu -3'
miRNA:   3'- cGUC-GUCGCCCUGaa-------CGUCaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 10548 0.71 0.539148
Target:  5'- aGCAGCGGaCGGGGCggucGCGGcGCCagGg -3'
miRNA:   3'- -CGUCGUC-GCCCUGaa--CGUCaCGGagC- -5'
23706 5' -57.5 NC_005261.1 + 136977 0.7 0.557187
Target:  5'- gGCGGCGGCGGGGgcggcgcccgcCUccagcaccagcgGCGGcGCCUCGg -3'
miRNA:   3'- -CGUCGUCGCCCU-----------GAa-----------CGUCaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 28142 0.7 0.579461
Target:  5'- cGCGGCGcccGgGGGGC-UGCGG-GCCUCc -3'
miRNA:   3'- -CGUCGU---CgCCCUGaACGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 68946 0.7 0.579461
Target:  5'- -gGGCAGCGcGGACgagcUGCGGcGCgUCGa -3'
miRNA:   3'- cgUCGUCGC-CCUGa---ACGUCaCGgAGC- -5'
23706 5' -57.5 NC_005261.1 + 119002 0.7 0.579461
Target:  5'- cGUAGUAGCGGGGCUcGguGaucgGCC-CGu -3'
miRNA:   3'- -CGUCGUCGCCCUGAaCguCa---CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 28520 0.7 0.58965
Target:  5'- -gGGCAGCGGGGCccGCGGgcgggcGCCcCGg -3'
miRNA:   3'- cgUCGUCGCCCUGaaCGUCa-----CGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.