miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 79587 0.84 0.093506
Target:  5'- gGAAGGCCG-GCAcGCGCCGCGCCa- -3'
miRNA:   3'- gUUUCCGGCuUGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 62202 0.79 0.183977
Target:  5'- -cGGGGCCuGGGCGUGCugaugcagcaGCCGCGCCUGc -3'
miRNA:   3'- guUUCCGG-CUUGUACG----------CGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 104032 0.77 0.272563
Target:  5'- -cGGGGCCGGGCGccGCGCgGCGCCg- -3'
miRNA:   3'- guUUCCGGCUUGUa-CGCGgCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 95384 0.76 0.285776
Target:  5'- cCGAGGGCCaGGGCGUguacaGCGCCGUGCgCUGc -3'
miRNA:   3'- -GUUUCCGG-CUUGUA-----CGCGGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 108594 0.76 0.313704
Target:  5'- cCGGAGGCCGGcgccggcggcGCggGCGcCCGCGCCg- -3'
miRNA:   3'- -GUUUCCGGCU----------UGuaCGC-GGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 20754 0.75 0.343651
Target:  5'- ----cGCCGGGCccGCGCCGCGCCc- -3'
miRNA:   3'- guuucCGGCUUGuaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 128024 0.75 0.351452
Target:  5'- ---cGGCCGAcacGCGcGCGCUGCGCCg- -3'
miRNA:   3'- guuuCCGGCU---UGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 123645 0.74 0.359378
Target:  5'- gCAGGGGC--GAUcgGCGCCGCGCCg- -3'
miRNA:   3'- -GUUUCCGgcUUGuaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 17963 0.74 0.359378
Target:  5'- --uGGGCUgguGAACAUGCGCggcgUGCGCCUGc -3'
miRNA:   3'- guuUCCGG---CUUGUACGCG----GCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 75836 0.74 0.359378
Target:  5'- aGAGGcGCCGccAGCAUGCGCCccgGCGCCa- -3'
miRNA:   3'- gUUUC-CGGC--UUGUACGCGG---CGCGGac -5'
23707 3' -57.2 NC_005261.1 + 26776 0.74 0.367428
Target:  5'- ---cGGCUGGGCugcgGCGCCGUGCCg- -3'
miRNA:   3'- guuuCCGGCUUGua--CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 61356 0.74 0.367428
Target:  5'- -cGAGGCCGcGCGcgcggcccucgGCGaCCGCGCCUGg -3'
miRNA:   3'- guUUCCGGCuUGUa----------CGC-GGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 77527 0.74 0.383897
Target:  5'- --cGGGCCGAGCccGCGCCGUGUUc- -3'
miRNA:   3'- guuUCCGGCUUGuaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 29226 0.74 0.393161
Target:  5'- --cAGGCCGGGCAgguucuccgcuagcaGCGCCGCGUCg- -3'
miRNA:   3'- guuUCCGGCUUGUa--------------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 69396 0.73 0.427148
Target:  5'- --cGGGCCGcGCggGCGCCGCGgCUu -3'
miRNA:   3'- guuUCCGGCuUGuaCGCGGCGCgGAc -5'
23707 3' -57.2 NC_005261.1 + 18392 0.73 0.43614
Target:  5'- gGAGGGCgccggcuacgCGGcCGUGUGCCGCGCCg- -3'
miRNA:   3'- gUUUCCG----------GCUuGUACGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 95611 0.73 0.448909
Target:  5'- aAAAGGCCucgcgcuccauaaccGAGCGUGCagacguccgcgGCCGCGCCg- -3'
miRNA:   3'- gUUUCCGG---------------CUUGUACG-----------CGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 41523 0.73 0.454445
Target:  5'- gGGGGGCgCGGguaGCGUGCGgauCCGCGCCUc -3'
miRNA:   3'- gUUUCCG-GCU---UGUACGC---GGCGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 75897 0.73 0.458155
Target:  5'- gCAGAGGUCGAacgggcccguguucuGCAggaagGCGCCGCGCg-- -3'
miRNA:   3'- -GUUUCCGGCU---------------UGUa----CGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 108027 0.72 0.463752
Target:  5'- uGAAGGCCGGcgcGCcggGCGCCGCGgCg- -3'
miRNA:   3'- gUUUCCGGCU---UGua-CGCGGCGCgGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.