miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 1906 0.72 0.463752
Target:  5'- --cGGGCagcagCGAGCAgcucgGCGCCGaCGCCUGc -3'
miRNA:   3'- guuUCCG-----GCUUGUa----CGCGGC-GCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 2723 0.66 0.835684
Target:  5'- ---cGGCCcucgcucgagGAGCucUGCGCCGCGCg-- -3'
miRNA:   3'- guuuCCGG----------CUUGu-ACGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 2803 0.67 0.791959
Target:  5'- ---uGGCCacGGCcgGCGCCGUGCUg- -3'
miRNA:   3'- guuuCCGGc-UUGuaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 3163 0.68 0.694737
Target:  5'- ---cGGCCGAGC--GCGUCGcCGCCg- -3'
miRNA:   3'- guuuCCGGCUUGuaCGCGGC-GCGGac -5'
23707 3' -57.2 NC_005261.1 + 3801 0.71 0.541421
Target:  5'- --cGGGCCuggcGAGCAUaaaGCGCCGgGUCUGg -3'
miRNA:   3'- guuUCCGG----CUUGUA---CGCGGCgCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 3829 0.68 0.744594
Target:  5'- ----uGCUGGGCG-GCGCCGCGgCUGc -3'
miRNA:   3'- guuucCGGCUUGUaCGCGGCGCgGAC- -5'
23707 3' -57.2 NC_005261.1 + 4166 0.68 0.744594
Target:  5'- ---cGGCCGGcagcgucgGCGUgGCGCaCGCGCCc- -3'
miRNA:   3'- guuuCCGGCU--------UGUA-CGCG-GCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 4538 0.68 0.724885
Target:  5'- ---uGGCCGGcGCGcGCgacuGCCGCGCCUa -3'
miRNA:   3'- guuuCCGGCU-UGUaCG----CGGCGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 4760 0.7 0.581895
Target:  5'- --uGGGCCGcGCu--CGCCGCGCCg- -3'
miRNA:   3'- guuUCCGGCuUGuacGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 5991 0.66 0.809947
Target:  5'- -cGAGGCCGc-----CGCCGaCGCCUGg -3'
miRNA:   3'- guUUCCGGCuuguacGCGGC-GCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 6187 0.67 0.782742
Target:  5'- --uGGGuCCGGGCccGC-CCGCGCCa- -3'
miRNA:   3'- guuUCC-GGCUUGuaCGcGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 6376 0.68 0.714903
Target:  5'- aCAAcuGGGCCGccgucacgGACGUG-GCCGC-CCUGg -3'
miRNA:   3'- -GUU--UCCGGC--------UUGUACgCGGCGcGGAC- -5'
23707 3' -57.2 NC_005261.1 + 6604 0.69 0.684569
Target:  5'- --uGGGCCccGAcgccGCGccCGCCGCGCCUGa -3'
miRNA:   3'- guuUCCGG--CU----UGUacGCGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 6805 0.69 0.68355
Target:  5'- gCGAcGGCCGAggccuACGcGCGCgcgcgcacguacgCGCGCCUGg -3'
miRNA:   3'- -GUUuCCGGCU-----UGUaCGCG-------------GCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 6959 0.7 0.621919
Target:  5'- --cGGcGCCG-GCGccccccuUGCGCCGCGCCUc -3'
miRNA:   3'- guuUC-CGGCuUGU-------ACGCGGCGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 7360 0.69 0.643548
Target:  5'- --cAGGCCGAGC--GCGCCGgcgaCGCCg- -3'
miRNA:   3'- guuUCCGGCUUGuaCGCGGC----GCGGac -5'
23707 3' -57.2 NC_005261.1 + 7527 0.71 0.541421
Target:  5'- ---cGGCCGg----GCGCCGCGgCCUGg -3'
miRNA:   3'- guuuCCGGCuuguaCGCGGCGC-GGAC- -5'
23707 3' -57.2 NC_005261.1 + 7812 0.7 0.612656
Target:  5'- gGAAGcGCCGccGCGcgGCcCCGCGCCUGg -3'
miRNA:   3'- gUUUC-CGGCu-UGUa-CGcGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 8162 0.7 0.592122
Target:  5'- gCGucGGcCCGcuCAgGCGCCGCGCCa- -3'
miRNA:   3'- -GUuuCC-GGCuuGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 8412 0.66 0.827282
Target:  5'- -cAAGuGUCGcGCAUGCGCUggGCGuCCUGu -3'
miRNA:   3'- guUUC-CGGCuUGUACGCGG--CGC-GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.