miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 9580 0.66 0.835684
Target:  5'- ---cGGCgGGGCucGCGCUGCGgCUGa -3'
miRNA:   3'- guuuCCGgCUUGuaCGCGGCGCgGAC- -5'
23707 3' -57.2 NC_005261.1 + 9751 0.66 0.809947
Target:  5'- ---cGGCUGGuuaaucuaaACAUGagggcgGCUGCGCCUGg -3'
miRNA:   3'- guuuCCGGCU---------UGUACg-----CGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 10522 0.69 0.643548
Target:  5'- -cAGGGCaCGAGCGggagucGCGCCgGCGCCc- -3'
miRNA:   3'- guUUCCG-GCUUGUa-----CGCGG-CGCGGac -5'
23707 3' -57.2 NC_005261.1 + 10599 0.66 0.818701
Target:  5'- -cGAGcGgCGGGCcgGCGCCGCGgCg- -3'
miRNA:   3'- guUUC-CgGCUUGuaCGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 10720 0.66 0.843899
Target:  5'- -cGGGGCgGGACGgcgGCgGCCGCuGCCc- -3'
miRNA:   3'- guUUCCGgCUUGUa--CG-CGGCG-CGGac -5'
23707 3' -57.2 NC_005261.1 + 10762 0.68 0.734784
Target:  5'- ---cGGCCGGACGcgacgGCgGCgGCGCCg- -3'
miRNA:   3'- guuuCCGGCUUGUa----CG-CGgCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 11056 0.71 0.531442
Target:  5'- gCGGGGGCCgGAGCGgcgggGCGCUGgGCCc- -3'
miRNA:   3'- -GUUUCCGG-CUUGUa----CGCGGCgCGGac -5'
23707 3' -57.2 NC_005261.1 + 12518 0.69 0.674358
Target:  5'- ---cGGCCGGGgcgGCGCCcuuggcugaagGCGCCUGa -3'
miRNA:   3'- guuuCCGGCUUguaCGCGG-----------CGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 13463 0.66 0.843899
Target:  5'- gCGGAGGCUccgccGCGcGCGCUGUGCCg- -3'
miRNA:   3'- -GUUUCCGGcu---UGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 15232 0.71 0.561559
Target:  5'- aCGAGGGCgGGGCggGCGCgCGgGCgUGg -3'
miRNA:   3'- -GUUUCCGgCUUGuaCGCG-GCgCGgAC- -5'
23707 3' -57.2 NC_005261.1 + 17197 0.68 0.704851
Target:  5'- -cGGGGCCGGGCccgGgGCCGCggGCCg- -3'
miRNA:   3'- guUUCCGGCUUGua-CgCGGCG--CGGac -5'
23707 3' -57.2 NC_005261.1 + 17963 0.74 0.359378
Target:  5'- --uGGGCUgguGAACAUGCGCggcgUGCGCCUGc -3'
miRNA:   3'- guuUCCGG---CUUGUACGCG----GCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 18031 0.68 0.734784
Target:  5'- ----cGCUGGACGgugcgcgacgGCGCCGCGCCc- -3'
miRNA:   3'- guuucCGGCUUGUa---------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 18167 0.68 0.704851
Target:  5'- cCAGAGcGCCG-ACGUGgagcgccgcuuCGCCGCGgCUGc -3'
miRNA:   3'- -GUUUC-CGGCuUGUAC-----------GCGGCGCgGAC- -5'
23707 3' -57.2 NC_005261.1 + 18392 0.73 0.43614
Target:  5'- gGAGGGCgccggcuacgCGGcCGUGUGCCGCGCCg- -3'
miRNA:   3'- gUUUCCG----------GCUuGUACGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 18752 0.71 0.550456
Target:  5'- ---uGGCCGAcaacgccACcgGCgGCgCGCGCCUGg -3'
miRNA:   3'- guuuCCGGCU-------UGuaCG-CG-GCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 18852 0.66 0.843899
Target:  5'- ---cGGCCGAGCAagGCcccGCCGCgggGCCg- -3'
miRNA:   3'- guuuCCGGCUUGUa-CG---CGGCG---CGGac -5'
23707 3' -57.2 NC_005261.1 + 19469 0.66 0.801031
Target:  5'- ---cGGCgccgCGGGCGcgGCGCCGCGCggCUGg -3'
miRNA:   3'- guuuCCG----GCUUGUa-CGCGGCGCG--GAC- -5'
23707 3' -57.2 NC_005261.1 + 19665 0.66 0.827282
Target:  5'- ---cGGgCGGGCAcgGCGUCGCGCUc- -3'
miRNA:   3'- guuuCCgGCUUGUa-CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 20001 0.67 0.782742
Target:  5'- cCGAGGcGCUGGcggccGCggGCGCCGCaGCCg- -3'
miRNA:   3'- -GUUUC-CGGCU-----UGuaCGCGGCG-CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.