miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 20203 0.67 0.754304
Target:  5'- --uGGGCC--GCggGCcCCGCGCCUGc -3'
miRNA:   3'- guuUCCGGcuUGuaCGcGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 20464 0.66 0.84713
Target:  5'- aCGAAGGCCGGcugcggccCGUGCGCgcucgcugcuacgggCGCGCUc- -3'
miRNA:   3'- -GUUUCCGGCUu-------GUACGCG---------------GCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 20682 0.72 0.492251
Target:  5'- -uGAGGCCGGcgcgcgggcccGCAaGCgGCCGCGCgCUGg -3'
miRNA:   3'- guUUCCGGCU-----------UGUaCG-CGGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 20754 0.75 0.343651
Target:  5'- ----cGCCGGGCccGCGCCGCGCCc- -3'
miRNA:   3'- guuucCGGCUUGuaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 21669 0.66 0.818701
Target:  5'- ---uGGCCG-ACGU-CGCCGC-CCUGc -3'
miRNA:   3'- guuuCCGGCuUGUAcGCGGCGcGGAC- -5'
23707 3' -57.2 NC_005261.1 + 22745 0.68 0.744594
Target:  5'- gGGGGGaaGAGgG-GCGCCGCGUCUa -3'
miRNA:   3'- gUUUCCggCUUgUaCGCGGCGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 22900 0.66 0.809947
Target:  5'- ---cGGCCGcGGCGgcGCGCCGCaGCCc- -3'
miRNA:   3'- guuuCCGGC-UUGUa-CGCGGCG-CGGac -5'
23707 3' -57.2 NC_005261.1 + 25245 0.72 0.482659
Target:  5'- ---cGGCUGAACGUGgagauCGCCgaGCGCCUGc -3'
miRNA:   3'- guuuCCGGCUUGUAC-----GCGG--CGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 25353 0.67 0.773387
Target:  5'- --cGGGCCGcGCGcgGCGUggCGCGCCa- -3'
miRNA:   3'- guuUCCGGCuUGUa-CGCG--GCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 25706 0.69 0.633249
Target:  5'- gAGGGGCUGGGCGUcGagGCCGUGCCc- -3'
miRNA:   3'- gUUUCCGGCUUGUA-Cg-CGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 26553 0.67 0.773387
Target:  5'- -uGAGGUCGcggagcGCGUGCGCgccaacCGCGCCUu -3'
miRNA:   3'- guUUCCGGCu-----UGUACGCG------GCGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 26776 0.74 0.367428
Target:  5'- ---cGGCUGGGCugcgGCGCCGUGCCg- -3'
miRNA:   3'- guuuCCGGCUUGua--CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 28900 0.67 0.782742
Target:  5'- gCAAAuGGCCgGGGCccGCGCC-CGCCg- -3'
miRNA:   3'- -GUUU-CCGG-CUUGuaCGCGGcGCGGac -5'
23707 3' -57.2 NC_005261.1 + 29226 0.74 0.393161
Target:  5'- --cAGGCCGGGCAgguucuccgcuagcaGCGCCGCGUCg- -3'
miRNA:   3'- guuUCCGGCUUGUa--------------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 29370 0.66 0.843899
Target:  5'- --cGGGCCGAACGc-CGCCGUGgCg- -3'
miRNA:   3'- guuUCCGGCUUGUacGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 29645 0.68 0.703843
Target:  5'- --cGGcGCCGcGGCGUccgcggcGCGCCGCGCCa- -3'
miRNA:   3'- guuUC-CGGC-UUGUA-------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 30074 0.67 0.791959
Target:  5'- cCAGAcGGCCGccGCGUGCuccgcgacCCGCGCCa- -3'
miRNA:   3'- -GUUU-CCGGCu-UGUACGc-------GGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 32165 0.66 0.801031
Target:  5'- ---cGGCCGccuGGCGcgGcCGCCGCGCCc- -3'
miRNA:   3'- guuuCCGGC---UUGUa-C-GCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 32248 0.67 0.782742
Target:  5'- ----cGCCGGACAUgGUGCCGCcucGCCg- -3'
miRNA:   3'- guuucCGGCUUGUA-CGCGGCG---CGGac -5'
23707 3' -57.2 NC_005261.1 + 32285 0.69 0.674358
Target:  5'- aCGucGGCCGGcgucGCcgGCGCgcgCGCGCCg- -3'
miRNA:   3'- -GUuuCCGGCU----UGuaCGCG---GCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.