miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 106444 0.68 0.693722
Target:  5'- --cGGcGCC-AACGUGCGCuacacgguggccaCGCGCCUGg -3'
miRNA:   3'- guuUC-CGGcUUGUACGCG-------------GCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 106328 0.66 0.835684
Target:  5'- ---uGGCCGcGCAgaGCGCgGCGCUg- -3'
miRNA:   3'- guuuCCGGCuUGUa-CGCGgCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 106224 0.66 0.843899
Target:  5'- ---cGGCCGGuguaccuggccuGCggGCGgCGCGCgCUGg -3'
miRNA:   3'- guuuCCGGCU------------UGuaCGCgGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 105902 0.71 0.520543
Target:  5'- -cGGGGCCGGcgacggcgGCAUcggcgggggguccGCGCCGCGCCc- -3'
miRNA:   3'- guUUCCGGCU--------UGUA-------------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 105341 0.67 0.791959
Target:  5'- gGAGGGCCaGGACucgGCGCCggggacgcgGCGCUg- -3'
miRNA:   3'- gUUUCCGG-CUUGua-CGCGG---------CGCGGac -5'
23707 3' -57.2 NC_005261.1 + 104032 0.77 0.272563
Target:  5'- -cGGGGCCGGGCGccGCGCgGCGCCg- -3'
miRNA:   3'- guUUCCGGCUUGUa-CGCGgCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 103081 0.68 0.744594
Target:  5'- --cGGGCCGGGC-UGCucggggagGCCGgGCCUc -3'
miRNA:   3'- guuUCCGGCUUGuACG--------CGGCgCGGAc -5'
23707 3' -57.2 NC_005261.1 + 101615 0.66 0.801031
Target:  5'- ----cGCCGGccCGUGCGuuGCGCCg- -3'
miRNA:   3'- guuucCGGCUu-GUACGCggCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 101120 0.71 0.551462
Target:  5'- ---uGGCCGAGcCGUGcCGCgGCGaCCUGu -3'
miRNA:   3'- guuuCCGGCUU-GUAC-GCGgCGC-GGAC- -5'
23707 3' -57.2 NC_005261.1 + 100205 0.68 0.694737
Target:  5'- uGGAGGCCuGGGC--GCGCCGCGgCg- -3'
miRNA:   3'- gUUUCCGG-CUUGuaCGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 99449 0.66 0.801031
Target:  5'- ---cGGCCGGGCGggccGCGgCGCGCg-- -3'
miRNA:   3'- guuuCCGGCUUGUa---CGCgGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 96336 0.68 0.734784
Target:  5'- ----cGCCGAAuCGUGCGCCGCauugaugaGCCa- -3'
miRNA:   3'- guuucCGGCUU-GUACGCGGCG--------CGGac -5'
23707 3' -57.2 NC_005261.1 + 96203 0.68 0.694737
Target:  5'- -cAGGGCgCGAGCcgcuccacgGCGCCGCGCg-- -3'
miRNA:   3'- guUUCCG-GCUUGua-------CGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 95711 0.66 0.801031
Target:  5'- --cGGGCCGccGCcgGCaGCCGCGCg-- -3'
miRNA:   3'- guuUCCGGCu-UGuaCG-CGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 95611 0.73 0.448909
Target:  5'- aAAAGGCCucgcgcuccauaaccGAGCGUGCagacguccgcgGCCGCGCCg- -3'
miRNA:   3'- gUUUCCGG---------------CUUGUACG-----------CGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 95384 0.76 0.285776
Target:  5'- cCGAGGGCCaGGGCGUguacaGCGCCGUGCgCUGc -3'
miRNA:   3'- -GUUUCCGG-CUUGUA-----CGCGGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 94903 0.69 0.643548
Target:  5'- -cGAGGCCuucgcggcGGACcuccUGCGCUGCGCCa- -3'
miRNA:   3'- guUUCCGG--------CUUGu---ACGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 94212 0.67 0.782742
Target:  5'- ---uGGCCG-ACAaGCuCCGCGCCa- -3'
miRNA:   3'- guuuCCGGCuUGUaCGcGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 93008 0.67 0.782742
Target:  5'- -cGGGGCCGcccuguuCGUGCagcuGUCGUGCCUGc -3'
miRNA:   3'- guUUCCGGCuu-----GUACG----CGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 92444 0.67 0.773387
Target:  5'- gCGAGGGCCGc-CAggGCGCCguugagcaugcGCGCCa- -3'
miRNA:   3'- -GUUUCCGGCuuGUa-CGCGG-----------CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.