miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 118980 0.7 0.571706
Target:  5'- ---cGGCC---CGUGUGCCGCGCCg- -3'
miRNA:   3'- guuuCCGGcuuGUACGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 118180 0.66 0.818701
Target:  5'- cCAAAGGCCcc----GCGcCCGCuGCCUGg -3'
miRNA:   3'- -GUUUCCGGcuuguaCGC-GGCG-CGGAC- -5'
23707 3' -57.2 NC_005261.1 + 117008 0.72 0.473158
Target:  5'- cCGGAGGCgCGGuccacuuugaguGCGUucccGCGCCGCGCCg- -3'
miRNA:   3'- -GUUUCCG-GCU------------UGUA----CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 116659 0.66 0.809947
Target:  5'- ---cGaGCCGAucgACAcgcgGCuGCUGCGCCUGg -3'
miRNA:   3'- guuuC-CGGCU---UGUa---CG-CGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 116315 0.66 0.809947
Target:  5'- -cGGGGCuCGAGgGgGCGCCGCGUg-- -3'
miRNA:   3'- guUUCCG-GCUUgUaCGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 115585 0.66 0.818701
Target:  5'- ---cGGCCGGcgGCG-GCGCUGcCGCCg- -3'
miRNA:   3'- guuuCCGGCU--UGUaCGCGGC-GCGGac -5'
23707 3' -57.2 NC_005261.1 + 109817 0.66 0.809947
Target:  5'- --cGGGCCGAggcgcgcgagcGCcgGCGggccgcCCGCGCCg- -3'
miRNA:   3'- guuUCCGGCU-----------UGuaCGC------GGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 109518 0.68 0.734784
Target:  5'- -uGAGGCUGcGGCGcgGaCGCCGCcGCCUGc -3'
miRNA:   3'- guUUCCGGC-UUGUa-C-GCGGCG-CGGAC- -5'
23707 3' -57.2 NC_005261.1 + 109083 0.66 0.801031
Target:  5'- ---uGGCCcGGCAgcGCGCCGcCGCCg- -3'
miRNA:   3'- guuuCCGGcUUGUa-CGCGGC-GCGGac -5'
23707 3' -57.2 NC_005261.1 + 108842 0.67 0.754304
Target:  5'- --cGGGcCCGGACcUGCaGCuggCGCGCCUGc -3'
miRNA:   3'- guuUCC-GGCUUGuACG-CG---GCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 108594 0.76 0.313704
Target:  5'- cCGGAGGCCGGcgccggcggcGCggGCGcCCGCGCCg- -3'
miRNA:   3'- -GUUUCCGGCU----------UGuaCGC-GGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 108553 0.68 0.734784
Target:  5'- ----cGCCGAGCugcGCGCCGUGCUc- -3'
miRNA:   3'- guuucCGGCUUGua-CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 108529 0.7 0.581895
Target:  5'- ---cGGCCGcGCG-GCGCCGgCGCCg- -3'
miRNA:   3'- guuuCCGGCuUGUaCGCGGC-GCGGac -5'
23707 3' -57.2 NC_005261.1 + 108458 0.67 0.773387
Target:  5'- ---uGG-CGGACGcUGCGCUGCgGCCUGc -3'
miRNA:   3'- guuuCCgGCUUGU-ACGCGGCG-CGGAC- -5'
23707 3' -57.2 NC_005261.1 + 108351 0.69 0.674358
Target:  5'- --cGGGCCGcGGCcUGCcgGCCGCgGCCUGc -3'
miRNA:   3'- guuUCCGGC-UUGuACG--CGGCG-CGGAC- -5'
23707 3' -57.2 NC_005261.1 + 108249 0.66 0.822154
Target:  5'- ---cGGUgGAGCGcgcgcgccuuagcgGCGCCGCGCCc- -3'
miRNA:   3'- guuuCCGgCUUGUa-------------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 108027 0.72 0.463752
Target:  5'- uGAAGGCCGGcgcGCcggGCGCCGCGgCg- -3'
miRNA:   3'- gUUUCCGGCU---UGua-CGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 107688 0.7 0.571706
Target:  5'- gGGAGGCCcgcggGAGCcccgGCGCCGgGCCg- -3'
miRNA:   3'- gUUUCCGG-----CUUGua--CGCGGCgCGGac -5'
23707 3' -57.2 NC_005261.1 + 106938 0.66 0.843899
Target:  5'- ---cGGCgaGGACGaGCGCCGgCGgCCUGa -3'
miRNA:   3'- guuuCCGg-CUUGUaCGCGGC-GC-GGAC- -5'
23707 3' -57.2 NC_005261.1 + 106594 0.66 0.801031
Target:  5'- ---cGGCgca--GUGCGCCGCGCgCUGg -3'
miRNA:   3'- guuuCCGgcuugUACGCGGCGCG-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.