miRNA display CGI


Results 1 - 20 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 137747 0.66 0.843899
Target:  5'- ---cGGCCGc-CA-GCGCCGCGUCc- -3'
miRNA:   3'- guuuCCGGCuuGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 137060 0.69 0.653838
Target:  5'- gGGAcGCCGcc---GCGCCGCGCCUGc -3'
miRNA:   3'- gUUUcCGGCuuguaCGCGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 136755 0.66 0.818701
Target:  5'- ---cGGCucccCGAGCcccaGCGCCGCGCuCUGc -3'
miRNA:   3'- guuuCCG----GCUUGua--CGCGGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 136512 0.66 0.818701
Target:  5'- -cGAGGCC-AGCAcgGCG-CGCGCCa- -3'
miRNA:   3'- guUUCCGGcUUGUa-CGCgGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 136112 0.66 0.801031
Target:  5'- ----cGCCGGGCG-GCGCCgccaGCGCCUc -3'
miRNA:   3'- guuucCGGCUUGUaCGCGG----CGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 135935 0.68 0.714903
Target:  5'- -cGGGGUCGAagGCGaGCGCCggGCGCCa- -3'
miRNA:   3'- guUUCCGGCU--UGUaCGCGG--CGCGGac -5'
23707 3' -57.2 NC_005261.1 + 135856 0.67 0.791959
Target:  5'- gCAGuAGGCCGc-CA-GCGCCGCgGCgCUGg -3'
miRNA:   3'- -GUU-UCCGGCuuGUaCGCGGCG-CG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 135662 0.7 0.571706
Target:  5'- ---cGGCCGAcuuGCGcuUGCGCCGCGgCg- -3'
miRNA:   3'- guuuCCGGCU---UGU--ACGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 135020 0.67 0.763905
Target:  5'- -cAGGGCCgcGAGCGcgGCcgccaGCCGCGCCg- -3'
miRNA:   3'- guUUCCGG--CUUGUa-CG-----CGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 134947 0.66 0.818701
Target:  5'- --cAGGCgGGcgcGCggGcCGCCGCGCCg- -3'
miRNA:   3'- guuUCCGgCU---UGuaC-GCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 134366 0.67 0.773387
Target:  5'- --cAGGCCGccACGUGCGgCaGCGCCc- -3'
miRNA:   3'- guuUCCGGCu-UGUACGCgG-CGCGGac -5'
23707 3' -57.2 NC_005261.1 + 134037 0.67 0.782742
Target:  5'- cCAGAGGCCcucgcgaGUGuCGcCCGCGCCg- -3'
miRNA:   3'- -GUUUCCGGcuug---UAC-GC-GGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 133994 0.72 0.511691
Target:  5'- ---cGGCCGGGCGgcgGCGgCGCGCUg- -3'
miRNA:   3'- guuuCCGGCUUGUa--CGCgGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 128024 0.75 0.351452
Target:  5'- ---cGGCCGAcacGCGcGCGCUGCGCCg- -3'
miRNA:   3'- guuuCCGGCU---UGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 127268 0.69 0.674358
Target:  5'- ----cGCCGGcaGCGUGCGCCGCcuccGCCg- -3'
miRNA:   3'- guuucCGGCU--UGUACGCGGCG----CGGac -5'
23707 3' -57.2 NC_005261.1 + 124755 0.66 0.843899
Target:  5'- ---cGGCUGcacgcggaAGCGcGCGCCGUGCCg- -3'
miRNA:   3'- guuuCCGGC--------UUGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 123645 0.74 0.359378
Target:  5'- gCAGGGGC--GAUcgGCGCCGCGCCg- -3'
miRNA:   3'- -GUUUCCGgcUUGuaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 122613 0.69 0.643548
Target:  5'- -cAAGGCCGcuGGCggGCGCCGC-CCg- -3'
miRNA:   3'- guUUCCGGC--UUGuaCGCGGCGcGGac -5'
23707 3' -57.2 NC_005261.1 + 121302 0.68 0.734784
Target:  5'- --uGGGcCCGGugGUGUGCCaGCGCUc- -3'
miRNA:   3'- guuUCC-GGCUugUACGCGG-CGCGGac -5'
23707 3' -57.2 NC_005261.1 + 120742 0.72 0.50193
Target:  5'- -cGAGGCCGAugAggauggcGCGCCGCGUg-- -3'
miRNA:   3'- guUUCCGGCUugUa------CGCGGCGCGgac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.