miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 108027 0.72 0.463752
Target:  5'- uGAAGGCCGGcgcGCcggGCGCCGCGgCg- -3'
miRNA:   3'- gUUUCCGGCU---UGua-CGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 117008 0.72 0.473158
Target:  5'- cCGGAGGCgCGGuccacuuugaguGCGUucccGCGCCGCGCCg- -3'
miRNA:   3'- -GUUUCCG-GCU------------UGUA----CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 34005 0.72 0.473158
Target:  5'- cCGGAGGCCGAGag-GCGCgccauaaagCGCGCCg- -3'
miRNA:   3'- -GUUUCCGGCUUguaCGCG---------GCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 25245 0.72 0.482659
Target:  5'- ---cGGCUGAACGUGgagauCGCCgaGCGCCUGc -3'
miRNA:   3'- guuuCCGGCUUGUAC-----GCGG--CGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 41020 0.72 0.482659
Target:  5'- ---cGGcCCGGGCGUGuCGCCGCGCg-- -3'
miRNA:   3'- guuuCC-GGCUUGUAC-GCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 20682 0.72 0.492251
Target:  5'- -uGAGGCCGGcgcgcgggcccGCAaGCgGCCGCGCgCUGg -3'
miRNA:   3'- guUUCCGGCU-----------UGUaCG-CGGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 120742 0.72 0.50193
Target:  5'- -cGAGGCCGAugAggauggcGCGCCGCGUg-- -3'
miRNA:   3'- guUUCCGGCUugUa------CGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 58310 0.72 0.511691
Target:  5'- uGGGGGaCgCGGACcgGCGCgCGCGCCg- -3'
miRNA:   3'- gUUUCC-G-GCUUGuaCGCG-GCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 133994 0.72 0.511691
Target:  5'- ---cGGCCGGGCGgcgGCGgCGCGCUg- -3'
miRNA:   3'- guuuCCGGCUUGUa--CGCgGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 61989 0.72 0.515618
Target:  5'- aAAAGGCCGGccggccccggcgcguGCAgaGCGCCGgCGCCa- -3'
miRNA:   3'- gUUUCCGGCU---------------UGUa-CGCGGC-GCGGac -5'
23707 3' -57.2 NC_005261.1 + 105902 0.71 0.520543
Target:  5'- -cGGGGCCGGcgacggcgGCAUcggcgggggguccGCGCCGCGCCc- -3'
miRNA:   3'- guUUCCGGCU--------UGUA-------------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 70262 0.71 0.52153
Target:  5'- --cGGGCCGcGGCGcgGCGaCCGCGCCg- -3'
miRNA:   3'- guuUCCGGC-UUGUa-CGC-GGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 51904 0.71 0.52153
Target:  5'- ---cGGCCGGGCcgGCGCC-UGUCUGc -3'
miRNA:   3'- guuuCCGGCUUGuaCGCGGcGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 37579 0.71 0.52153
Target:  5'- gAAGGGC---GCGUGCGCCuGCGCCg- -3'
miRNA:   3'- gUUUCCGgcuUGUACGCGG-CGCGGac -5'
23707 3' -57.2 NC_005261.1 + 79316 0.71 0.52153
Target:  5'- gAGAGcGCgCGcGgGUGCGCCGCGCCc- -3'
miRNA:   3'- gUUUC-CG-GCuUgUACGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 42236 0.71 0.531442
Target:  5'- aGAAGGCCGuc---GUGCCGCGCgUGc -3'
miRNA:   3'- gUUUCCGGCuuguaCGCGGCGCGgAC- -5'
23707 3' -57.2 NC_005261.1 + 11056 0.71 0.531442
Target:  5'- gCGGGGGCCgGAGCGgcgggGCGCUGgGCCc- -3'
miRNA:   3'- -GUUUCCGG-CUUGUa----CGCGGCgCGGac -5'
23707 3' -57.2 NC_005261.1 + 91402 0.71 0.531442
Target:  5'- ----cGCCGGcaGCGcGCGCCGCGCCg- -3'
miRNA:   3'- guuucCGGCU--UGUaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 7527 0.71 0.541421
Target:  5'- ---cGGCCGg----GCGCCGCGgCCUGg -3'
miRNA:   3'- guuuCCGGCuuguaCGCGGCGC-GGAC- -5'
23707 3' -57.2 NC_005261.1 + 33671 0.71 0.541421
Target:  5'- ---cGGCCGAGgGcGCGUCGUGCCg- -3'
miRNA:   3'- guuuCCGGCUUgUaCGCGGCGCGGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.