Results 21 - 40 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23707 | 3' | -57.2 | NC_005261.1 | + | 108027 | 0.72 | 0.463752 |
Target: 5'- uGAAGGCCGGcgcGCcggGCGCCGCGgCg- -3' miRNA: 3'- gUUUCCGGCU---UGua-CGCGGCGCgGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 117008 | 0.72 | 0.473158 |
Target: 5'- cCGGAGGCgCGGuccacuuugaguGCGUucccGCGCCGCGCCg- -3' miRNA: 3'- -GUUUCCG-GCU------------UGUA----CGCGGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 34005 | 0.72 | 0.473158 |
Target: 5'- cCGGAGGCCGAGag-GCGCgccauaaagCGCGCCg- -3' miRNA: 3'- -GUUUCCGGCUUguaCGCG---------GCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 25245 | 0.72 | 0.482659 |
Target: 5'- ---cGGCUGAACGUGgagauCGCCgaGCGCCUGc -3' miRNA: 3'- guuuCCGGCUUGUAC-----GCGG--CGCGGAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 41020 | 0.72 | 0.482659 |
Target: 5'- ---cGGcCCGGGCGUGuCGCCGCGCg-- -3' miRNA: 3'- guuuCC-GGCUUGUAC-GCGGCGCGgac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 20682 | 0.72 | 0.492251 |
Target: 5'- -uGAGGCCGGcgcgcgggcccGCAaGCgGCCGCGCgCUGg -3' miRNA: 3'- guUUCCGGCU-----------UGUaCG-CGGCGCG-GAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 120742 | 0.72 | 0.50193 |
Target: 5'- -cGAGGCCGAugAggauggcGCGCCGCGUg-- -3' miRNA: 3'- guUUCCGGCUugUa------CGCGGCGCGgac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 58310 | 0.72 | 0.511691 |
Target: 5'- uGGGGGaCgCGGACcgGCGCgCGCGCCg- -3' miRNA: 3'- gUUUCC-G-GCUUGuaCGCG-GCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 133994 | 0.72 | 0.511691 |
Target: 5'- ---cGGCCGGGCGgcgGCGgCGCGCUg- -3' miRNA: 3'- guuuCCGGCUUGUa--CGCgGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 61989 | 0.72 | 0.515618 |
Target: 5'- aAAAGGCCGGccggccccggcgcguGCAgaGCGCCGgCGCCa- -3' miRNA: 3'- gUUUCCGGCU---------------UGUa-CGCGGC-GCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 105902 | 0.71 | 0.520543 |
Target: 5'- -cGGGGCCGGcgacggcgGCAUcggcgggggguccGCGCCGCGCCc- -3' miRNA: 3'- guUUCCGGCU--------UGUA-------------CGCGGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 70262 | 0.71 | 0.52153 |
Target: 5'- --cGGGCCGcGGCGcgGCGaCCGCGCCg- -3' miRNA: 3'- guuUCCGGC-UUGUa-CGC-GGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 51904 | 0.71 | 0.52153 |
Target: 5'- ---cGGCCGGGCcgGCGCC-UGUCUGc -3' miRNA: 3'- guuuCCGGCUUGuaCGCGGcGCGGAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 37579 | 0.71 | 0.52153 |
Target: 5'- gAAGGGC---GCGUGCGCCuGCGCCg- -3' miRNA: 3'- gUUUCCGgcuUGUACGCGG-CGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 79316 | 0.71 | 0.52153 |
Target: 5'- gAGAGcGCgCGcGgGUGCGCCGCGCCc- -3' miRNA: 3'- gUUUC-CG-GCuUgUACGCGGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 42236 | 0.71 | 0.531442 |
Target: 5'- aGAAGGCCGuc---GUGCCGCGCgUGc -3' miRNA: 3'- gUUUCCGGCuuguaCGCGGCGCGgAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 11056 | 0.71 | 0.531442 |
Target: 5'- gCGGGGGCCgGAGCGgcgggGCGCUGgGCCc- -3' miRNA: 3'- -GUUUCCGG-CUUGUa----CGCGGCgCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 91402 | 0.71 | 0.531442 |
Target: 5'- ----cGCCGGcaGCGcGCGCCGCGCCg- -3' miRNA: 3'- guuucCGGCU--UGUaCGCGGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 7527 | 0.71 | 0.541421 |
Target: 5'- ---cGGCCGg----GCGCCGCGgCCUGg -3' miRNA: 3'- guuuCCGGCuuguaCGCGGCGC-GGAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 33671 | 0.71 | 0.541421 |
Target: 5'- ---cGGCCGAGgGcGCGUCGUGCCg- -3' miRNA: 3'- guuuCCGGCUUgUaCGCGGCGCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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