miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 9580 0.66 0.835684
Target:  5'- ---cGGCgGGGCucGCGCUGCGgCUGa -3'
miRNA:   3'- guuuCCGgCUUGuaCGCGGCGCgGAC- -5'
23707 3' -57.2 NC_005261.1 + 92168 0.66 0.835684
Target:  5'- uCGAAGGCCGcgugGACGagcGCGUCGCagGCCg- -3'
miRNA:   3'- -GUUUCCGGC----UUGUa--CGCGGCG--CGGac -5'
23707 3' -57.2 NC_005261.1 + 61510 0.66 0.830665
Target:  5'- aGGAGGCCGAcgGCAcgcucuucgcccacgUcGCGCUGUGCgUGc -3'
miRNA:   3'- gUUUCCGGCU--UGU---------------A-CGCGGCGCGgAC- -5'
23707 3' -57.2 NC_005261.1 + 38931 0.66 0.827282
Target:  5'- --cGGGCCGAcccGCGgcgGCGCUG-GCCg- -3'
miRNA:   3'- guuUCCGGCU---UGUa--CGCGGCgCGGac -5'
23707 3' -57.2 NC_005261.1 + 8412 0.66 0.827282
Target:  5'- -cAAGuGUCGcGCAUGCGCUggGCGuCCUGu -3'
miRNA:   3'- guUUC-CGGCuUGUACGCGG--CGC-GGAC- -5'
23707 3' -57.2 NC_005261.1 + 19665 0.66 0.827282
Target:  5'- ---cGGgCGGGCAcgGCGUCGCGCUc- -3'
miRNA:   3'- guuuCCgGCUUGUa-CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 48435 0.66 0.827282
Target:  5'- ---uGGCCGGgaucACA-GUGCCGCGCg-- -3'
miRNA:   3'- guuuCCGGCU----UGUaCGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 49919 0.66 0.827282
Target:  5'- ---uGGgCGGGCc-GUGCCGCGCCg- -3'
miRNA:   3'- guuuCCgGCUUGuaCGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 50488 0.66 0.826432
Target:  5'- --cGGGCCGGGCguaccguGUGUcuGCCGCcacccgggGCCUGg -3'
miRNA:   3'- guuUCCGGCUUG-------UACG--CGGCG--------CGGAC- -5'
23707 3' -57.2 NC_005261.1 + 108249 0.66 0.822154
Target:  5'- ---cGGUgGAGCGcgcgcgccuuagcgGCGCCGCGCCc- -3'
miRNA:   3'- guuuCCGgCUUGUa-------------CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 21669 0.66 0.818701
Target:  5'- ---uGGCCG-ACGU-CGCCGC-CCUGc -3'
miRNA:   3'- guuuCCGGCuUGUAcGCGGCGcGGAC- -5'
23707 3' -57.2 NC_005261.1 + 64944 0.66 0.818701
Target:  5'- --cAGGCCGGccGCGUccGCGuCCGCGCg-- -3'
miRNA:   3'- guuUCCGGCU--UGUA--CGC-GGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 75963 0.66 0.818701
Target:  5'- -cGAGGCCagcgcGAGCcgGuCGCCGgGCCc- -3'
miRNA:   3'- guUUCCGG-----CUUGuaC-GCGGCgCGGac -5'
23707 3' -57.2 NC_005261.1 + 136755 0.66 0.818701
Target:  5'- ---cGGCucccCGAGCcccaGCGCCGCGCuCUGc -3'
miRNA:   3'- guuuCCG----GCUUGua--CGCGGCGCG-GAC- -5'
23707 3' -57.2 NC_005261.1 + 10599 0.66 0.818701
Target:  5'- -cGAGcGgCGGGCcgGCGCCGCGgCg- -3'
miRNA:   3'- guUUC-CgGCUUGuaCGCGGCGCgGac -5'
23707 3' -57.2 NC_005261.1 + 69699 0.66 0.818701
Target:  5'- uGGGGGCCGGcgcggacgACGgcgGCGCCG-GCCc- -3'
miRNA:   3'- gUUUCCGGCU--------UGUa--CGCGGCgCGGac -5'
23707 3' -57.2 NC_005261.1 + 115585 0.66 0.818701
Target:  5'- ---cGGCCGGcgGCG-GCGCUGcCGCCg- -3'
miRNA:   3'- guuuCCGGCU--UGUaCGCGGC-GCGGac -5'
23707 3' -57.2 NC_005261.1 + 118180 0.66 0.818701
Target:  5'- cCAAAGGCCcc----GCGcCCGCuGCCUGg -3'
miRNA:   3'- -GUUUCCGGcuuguaCGC-GGCG-CGGAC- -5'
23707 3' -57.2 NC_005261.1 + 134947 0.66 0.818701
Target:  5'- --cAGGCgGGcgcGCggGcCGCCGCGCCg- -3'
miRNA:   3'- guuUCCGgCU---UGuaC-GCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 136512 0.66 0.818701
Target:  5'- -cGAGGCC-AGCAcgGCG-CGCGCCa- -3'
miRNA:   3'- guUUCCGGcUUGUa-CGCgGCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.