miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 3' -57.2 NC_005261.1 + 69699 0.66 0.818701
Target:  5'- uGGGGGCCGGcgcggacgACGgcgGCGCCG-GCCc- -3'
miRNA:   3'- gUUUCCGGCU--------UGUa--CGCGGCgCGGac -5'
23707 3' -57.2 NC_005261.1 + 42628 0.66 0.809947
Target:  5'- gGGGGcGCCGGGagccucgcGCGCUGCGCCg- -3'
miRNA:   3'- gUUUC-CGGCUUgua-----CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 109817 0.66 0.809947
Target:  5'- --cGGGCCGAggcgcgcgagcGCcgGCGggccgcCCGCGCCg- -3'
miRNA:   3'- guuUCCGGCU-----------UGuaCGC------GGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 9751 0.66 0.809947
Target:  5'- ---cGGCUGGuuaaucuaaACAUGagggcgGCUGCGCCUGg -3'
miRNA:   3'- guuuCCGGCU---------UGUACg-----CGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 116659 0.66 0.809947
Target:  5'- ---cGaGCCGAucgACAcgcgGCuGCUGCGCCUGg -3'
miRNA:   3'- guuuC-CGGCU---UGUa---CG-CGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 116315 0.66 0.809947
Target:  5'- -cGGGGCuCGAGgGgGCGCCGCGUg-- -3'
miRNA:   3'- guUUCCG-GCUUgUaCGCGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 70738 0.66 0.809947
Target:  5'- --cGGGCCGccCGUccgcGCGCgGCGCCa- -3'
miRNA:   3'- guuUCCGGCuuGUA----CGCGgCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 37693 0.66 0.809947
Target:  5'- ---cGGCCGcGGCGcGCGCCGCccgaGCCg- -3'
miRNA:   3'- guuuCCGGC-UUGUaCGCGGCG----CGGac -5'
23707 3' -57.2 NC_005261.1 + 22900 0.66 0.809947
Target:  5'- ---cGGCCGcGGCGgcGCGCCGCaGCCc- -3'
miRNA:   3'- guuuCCGGC-UUGUa-CGCGGCG-CGGac -5'
23707 3' -57.2 NC_005261.1 + 5991 0.66 0.809947
Target:  5'- -cGAGGCCGc-----CGCCGaCGCCUGg -3'
miRNA:   3'- guUUCCGGCuuguacGCGGC-GCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 47677 0.66 0.809063
Target:  5'- ---cGGCgGuauauACAcgaccgcUGgGCCGCGCCUGa -3'
miRNA:   3'- guuuCCGgCu----UGU-------ACgCGGCGCGGAC- -5'
23707 3' -57.2 NC_005261.1 + 101615 0.66 0.801031
Target:  5'- ----cGCCGGccCGUGCGuuGCGCCg- -3'
miRNA:   3'- guuucCGGCUu-GUACGCggCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 136112 0.66 0.801031
Target:  5'- ----cGCCGGGCG-GCGCCgccaGCGCCUc -3'
miRNA:   3'- guuucCGGCUUGUaCGCGG----CGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 19469 0.66 0.801031
Target:  5'- ---cGGCgccgCGGGCGcgGCGCCGCGCggCUGg -3'
miRNA:   3'- guuuCCG----GCUUGUa-CGCGGCGCG--GAC- -5'
23707 3' -57.2 NC_005261.1 + 32165 0.66 0.801031
Target:  5'- ---cGGCCGccuGGCGcgGcCGCCGCGCCc- -3'
miRNA:   3'- guuuCCGGC---UUGUa-C-GCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 35566 0.66 0.801031
Target:  5'- ----cGCCGGucuGCGccucGCGCCGCGCCa- -3'
miRNA:   3'- guuucCGGCU---UGUa---CGCGGCGCGGac -5'
23707 3' -57.2 NC_005261.1 + 64183 0.66 0.801031
Target:  5'- ----cGCC-AGCAacGCGCCGCGCCUc -3'
miRNA:   3'- guuucCGGcUUGUa-CGCGGCGCGGAc -5'
23707 3' -57.2 NC_005261.1 + 67809 0.66 0.801031
Target:  5'- --cGGGCgCGAgcgcagcgGCGUGCGCC-CGCCc- -3'
miRNA:   3'- guuUCCG-GCU--------UGUACGCGGcGCGGac -5'
23707 3' -57.2 NC_005261.1 + 95711 0.66 0.801031
Target:  5'- --cGGGCCGccGCcgGCaGCCGCGCg-- -3'
miRNA:   3'- guuUCCGGCu-UGuaCG-CGGCGCGgac -5'
23707 3' -57.2 NC_005261.1 + 99449 0.66 0.801031
Target:  5'- ---cGGCCGGGCGggccGCGgCGCGCg-- -3'
miRNA:   3'- guuuCCGGCUUGUa---CGCgGCGCGgac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.