Results 41 - 60 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23707 | 3' | -57.2 | NC_005261.1 | + | 69699 | 0.66 | 0.818701 |
Target: 5'- uGGGGGCCGGcgcggacgACGgcgGCGCCG-GCCc- -3' miRNA: 3'- gUUUCCGGCU--------UGUa--CGCGGCgCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 42628 | 0.66 | 0.809947 |
Target: 5'- gGGGGcGCCGGGagccucgcGCGCUGCGCCg- -3' miRNA: 3'- gUUUC-CGGCUUgua-----CGCGGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 109817 | 0.66 | 0.809947 |
Target: 5'- --cGGGCCGAggcgcgcgagcGCcgGCGggccgcCCGCGCCg- -3' miRNA: 3'- guuUCCGGCU-----------UGuaCGC------GGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 9751 | 0.66 | 0.809947 |
Target: 5'- ---cGGCUGGuuaaucuaaACAUGagggcgGCUGCGCCUGg -3' miRNA: 3'- guuuCCGGCU---------UGUACg-----CGGCGCGGAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 116659 | 0.66 | 0.809947 |
Target: 5'- ---cGaGCCGAucgACAcgcgGCuGCUGCGCCUGg -3' miRNA: 3'- guuuC-CGGCU---UGUa---CG-CGGCGCGGAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 116315 | 0.66 | 0.809947 |
Target: 5'- -cGGGGCuCGAGgGgGCGCCGCGUg-- -3' miRNA: 3'- guUUCCG-GCUUgUaCGCGGCGCGgac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 70738 | 0.66 | 0.809947 |
Target: 5'- --cGGGCCGccCGUccgcGCGCgGCGCCa- -3' miRNA: 3'- guuUCCGGCuuGUA----CGCGgCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 37693 | 0.66 | 0.809947 |
Target: 5'- ---cGGCCGcGGCGcGCGCCGCccgaGCCg- -3' miRNA: 3'- guuuCCGGC-UUGUaCGCGGCG----CGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 22900 | 0.66 | 0.809947 |
Target: 5'- ---cGGCCGcGGCGgcGCGCCGCaGCCc- -3' miRNA: 3'- guuuCCGGC-UUGUa-CGCGGCG-CGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 5991 | 0.66 | 0.809947 |
Target: 5'- -cGAGGCCGc-----CGCCGaCGCCUGg -3' miRNA: 3'- guUUCCGGCuuguacGCGGC-GCGGAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 47677 | 0.66 | 0.809063 |
Target: 5'- ---cGGCgGuauauACAcgaccgcUGgGCCGCGCCUGa -3' miRNA: 3'- guuuCCGgCu----UGU-------ACgCGGCGCGGAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 101615 | 0.66 | 0.801031 |
Target: 5'- ----cGCCGGccCGUGCGuuGCGCCg- -3' miRNA: 3'- guuucCGGCUu-GUACGCggCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 136112 | 0.66 | 0.801031 |
Target: 5'- ----cGCCGGGCG-GCGCCgccaGCGCCUc -3' miRNA: 3'- guuucCGGCUUGUaCGCGG----CGCGGAc -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 19469 | 0.66 | 0.801031 |
Target: 5'- ---cGGCgccgCGGGCGcgGCGCCGCGCggCUGg -3' miRNA: 3'- guuuCCG----GCUUGUa-CGCGGCGCG--GAC- -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 32165 | 0.66 | 0.801031 |
Target: 5'- ---cGGCCGccuGGCGcgGcCGCCGCGCCc- -3' miRNA: 3'- guuuCCGGC---UUGUa-C-GCGGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 35566 | 0.66 | 0.801031 |
Target: 5'- ----cGCCGGucuGCGccucGCGCCGCGCCa- -3' miRNA: 3'- guuucCGGCU---UGUa---CGCGGCGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 64183 | 0.66 | 0.801031 |
Target: 5'- ----cGCC-AGCAacGCGCCGCGCCUc -3' miRNA: 3'- guuucCGGcUUGUa-CGCGGCGCGGAc -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 67809 | 0.66 | 0.801031 |
Target: 5'- --cGGGCgCGAgcgcagcgGCGUGCGCC-CGCCc- -3' miRNA: 3'- guuUCCG-GCU--------UGUACGCGGcGCGGac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 95711 | 0.66 | 0.801031 |
Target: 5'- --cGGGCCGccGCcgGCaGCCGCGCg-- -3' miRNA: 3'- guuUCCGGCu-UGuaCG-CGGCGCGgac -5' |
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23707 | 3' | -57.2 | NC_005261.1 | + | 99449 | 0.66 | 0.801031 |
Target: 5'- ---cGGCCGGGCGggccGCGgCGCGCg-- -3' miRNA: 3'- guuuCCGGCUUGUa---CGCgGCGCGgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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