miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 39335 0.66 0.423915
Target:  5'- cGCcgCCGCGGCCaagcugcgcgCGGCGGCaGcCGCCu -3'
miRNA:   3'- cCG--GGCGCCGGg---------GCCGCUGgCaGCGG- -5'
23715 5' -67 NC_005261.1 + 95819 0.66 0.423915
Target:  5'- gGGCUCGCGGUCCucgCGGCGcUUGUgGgCg -3'
miRNA:   3'- -CCGGGCGCCGGG---GCCGCuGGCAgCgG- -5'
23715 5' -67 NC_005261.1 + 68830 0.66 0.427176
Target:  5'- gGGCCgugGCGGCCCCcccgucccgcGgggacgcccucugccGCGGCUGUgCGCCg -3'
miRNA:   3'- -CCGGg--CGCCGGGG----------C---------------CGCUGGCA-GCGG- -5'
23715 5' -67 NC_005261.1 + 101460 0.66 0.423915
Target:  5'- uGGCCCcaGC-GCCgCCGGCGGCgG-CGUg -3'
miRNA:   3'- -CCGGG--CGcCGG-GGCCGCUGgCaGCGg -5'
23715 5' -67 NC_005261.1 + 49922 0.66 0.423915
Target:  5'- uGGCCCGCcucgaGGCgCCC-GCGgaGCCG-CGCa -3'
miRNA:   3'- -CCGGGCG-----CCG-GGGcCGC--UGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 117539 0.66 0.423915
Target:  5'- --aCCGCGGCgCCGGaggggcuGACCGUguucuuuuucUGCCg -3'
miRNA:   3'- ccgGGCGCCGgGGCCg------CUGGCA----------GCGG- -5'
23715 5' -67 NC_005261.1 + 34916 0.66 0.423915
Target:  5'- aGGUCggggCGCGGCCacgcggggGGCGGCCGgCGCg -3'
miRNA:   3'- -CCGG----GCGCCGGgg------CCGCUGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 51512 0.66 0.432096
Target:  5'- cGGCCagauGCugGGCgCCgGGCuggGGCUGUCGCUa -3'
miRNA:   3'- -CCGGg---CG--CCG-GGgCCG---CUGGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 70859 0.66 0.432096
Target:  5'- aGGUCCaggGCGGCCgccguggcguggCCGGCGgugcacaugGCCGUgcacuugcgCGCCa -3'
miRNA:   3'- -CCGGG---CGCCGG------------GGCCGC---------UGGCA---------GCGG- -5'
23715 5' -67 NC_005261.1 + 38678 0.66 0.423915
Target:  5'- gGGCCCGCcaGUCUCGcGCuGGCCGg-GCCc -3'
miRNA:   3'- -CCGGGCGc-CGGGGC-CG-CUGGCagCGG- -5'
23715 5' -67 NC_005261.1 + 3725 0.66 0.431274
Target:  5'- cGCgCCGCuGCCggacgcgCCGGCGgcgcACCG-CGCCg -3'
miRNA:   3'- cCG-GGCGcCGG-------GGCCGC----UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 132925 0.66 0.465713
Target:  5'- cGGCUccugcccuucuaCGUGGuCCCCGaGCG-CUG-CGCCg -3'
miRNA:   3'- -CCGG------------GCGCC-GGGGC-CGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 101918 0.66 0.432096
Target:  5'- aGCCgCGUGcCCCCGGCGGuaGaaCGCCa -3'
miRNA:   3'- cCGG-GCGCcGGGGCCGCUggCa-GCGG- -5'
23715 5' -67 NC_005261.1 + 112707 0.66 0.423915
Target:  5'- uGCCCGUgcaGGaCCUGGCGuuccUCGUCGUCc -3'
miRNA:   3'- cCGGGCG---CCgGGGCCGCu---GGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 74898 0.66 0.423915
Target:  5'- aGUCgGCGGCCCgCGcUGGCCG-CGCg -3'
miRNA:   3'- cCGGgCGCCGGG-GCcGCUGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 6347 0.66 0.423915
Target:  5'- uGCCCacCGGCCUCGcGcCGGuCCGgCGCCg -3'
miRNA:   3'- cCGGGc-GCCGGGGC-C-GCU-GGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 58689 0.66 0.423915
Target:  5'- aGGCCCG-GGCCgUcagGGCGcGCCGcugagaggugCGCCa -3'
miRNA:   3'- -CCGGGCgCCGGgG---CCGC-UGGCa---------GCGG- -5'
23715 5' -67 NC_005261.1 + 69164 0.66 0.423915
Target:  5'- cGCgCCGcCGcGCCCCuugacgagGGC-ACCGUCGCg -3'
miRNA:   3'- cCG-GGC-GC-CGGGG--------CCGcUGGCAGCGg -5'
23715 5' -67 NC_005261.1 + 68184 0.66 0.423915
Target:  5'- cGCgCCGCgGGCCCCcucGCccCCGcCGCCg -3'
miRNA:   3'- cCG-GGCG-CCGGGGc--CGcuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 127619 0.66 0.42229
Target:  5'- cGCuaGCGGCCggccggacgcgaCGGCGGCgG-CGCCg -3'
miRNA:   3'- cCGggCGCCGGg-----------GCCGCUGgCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.