miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 77037 0.87 0.014806
Target:  5'- aGGCCgcgcgCGCGGCCCuCGGCGACCG-CGCCu -3'
miRNA:   3'- -CCGG-----GCGCCGGG-GCCGCUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 30706 0.86 0.017686
Target:  5'- aGGCCCGCGggaGCCCCGGCG-CCGggcCGCCa -3'
miRNA:   3'- -CCGGGCGC---CGGGGCCGCuGGCa--GCGG- -5'
23715 5' -67 NC_005261.1 + 78107 0.85 0.020592
Target:  5'- aGGCCC-CGGCCCCGGCcccACCGcUCGCCa -3'
miRNA:   3'- -CCGGGcGCCGGGGCCGc--UGGC-AGCGG- -5'
23715 5' -67 NC_005261.1 + 69258 0.83 0.031644
Target:  5'- uGGCCCGCGccgaCCCCGGCGAgCCGcccgCGCCg -3'
miRNA:   3'- -CCGGGCGCc---GGGGCCGCU-GGCa---GCGG- -5'
23715 5' -67 NC_005261.1 + 76405 0.83 0.033278
Target:  5'- aGGCCgGcCGGCCCCGGCGcgugcagagcGCCGgCGCCa -3'
miRNA:   3'- -CCGGgC-GCCGGGGCCGC----------UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 38922 0.82 0.035887
Target:  5'- gGGCCCGCGcGCCaagCCGGCGGCCGggcggGCCg -3'
miRNA:   3'- -CCGGGCGC-CGG---GGCCGCUGGCag---CGG- -5'
23715 5' -67 NC_005261.1 + 11923 0.82 0.035887
Target:  5'- cGGCCgGCGGCUgCGGCGGCCcG-CGCCg -3'
miRNA:   3'- -CCGGgCGCCGGgGCCGCUGG-CaGCGG- -5'
23715 5' -67 NC_005261.1 + 29862 0.82 0.0368
Target:  5'- cGGCCgCGCGGCgCCGGCGccGCUGcCGCCa -3'
miRNA:   3'- -CCGG-GCGCCGgGGCCGC--UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 102542 0.82 0.037737
Target:  5'- cGCCUGCGGCCCCaGGCGcCCGgcggacaccgccUCGCCg -3'
miRNA:   3'- cCGGGCGCCGGGG-CCGCuGGC------------AGCGG- -5'
23715 5' -67 NC_005261.1 + 118386 0.82 0.037737
Target:  5'- cGGCCCGaGGCgCUGGCGGCCGcgggCGCCg -3'
miRNA:   3'- -CCGGGCgCCGgGGCCGCUGGCa---GCGG- -5'
23715 5' -67 NC_005261.1 + 98126 0.82 0.038696
Target:  5'- gGGaCgCCGCGGCaCCGGCGGCCGUCGgCg -3'
miRNA:   3'- -CC-G-GGCGCCGgGGCCGCUGGCAGCgG- -5'
23715 5' -67 NC_005261.1 + 71431 0.82 0.038696
Target:  5'- cGGCCCG-GGCCCgCGGCGcgcaGCCGcCGCCu -3'
miRNA:   3'- -CCGGGCgCCGGG-GCCGC----UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 11176 0.82 0.038696
Target:  5'- --gCCGCGGCCCCGGCccuCCGUCGCg -3'
miRNA:   3'- ccgGGCGCCGGGGCCGcu-GGCAGCGg -5'
23715 5' -67 NC_005261.1 + 126073 0.82 0.03968
Target:  5'- cGCCCGcCGGCCUCGGCGGgCG-CGCCc -3'
miRNA:   3'- cCGGGC-GCCGGGGCCGCUgGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 84287 0.81 0.04172
Target:  5'- cGCCgGCGGCCCCGGCc-CCGgcggCGCCg -3'
miRNA:   3'- cCGGgCGCCGGGGCCGcuGGCa---GCGG- -5'
23715 5' -67 NC_005261.1 + 46948 0.81 0.043864
Target:  5'- cGGCCCGCGGgCCaguccGCG-CCGUCGCCg -3'
miRNA:   3'- -CCGGGCGCCgGGgc---CGCuGGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 28833 0.81 0.047282
Target:  5'- aGGCggCCGCGGCUgaGGCGGCCGUCGUg -3'
miRNA:   3'- -CCG--GGCGCCGGggCCGCUGGCAGCGg -5'
23715 5' -67 NC_005261.1 + 87761 0.81 0.047282
Target:  5'- aGCCCGCgGGCCCUGGCGcgagggucACCGUCuugGCCg -3'
miRNA:   3'- cCGGGCG-CCGGGGCCGC--------UGGCAG---CGG- -5'
23715 5' -67 NC_005261.1 + 62987 0.81 0.047282
Target:  5'- uGGCCCuccuccagcCGGCCCuCGGCGGCCG-CGCCc -3'
miRNA:   3'- -CCGGGc--------GCCGGG-GCCGCUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 84371 0.8 0.048478
Target:  5'- cGCCCGCGGgCUCGGCcucGGCCGcCGCCu -3'
miRNA:   3'- cCGGGCGCCgGGGCCG---CUGGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.