miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 95 0.7 0.275395
Target:  5'- gGGCgCGCccccgGGCCCCGcCGcCCG-CGCCg -3'
miRNA:   3'- -CCGgGCG-----CCGGGGCcGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 194 0.7 0.275395
Target:  5'- -uCCCGgGGCCagCGGUG-CCGcCGCCg -3'
miRNA:   3'- ccGGGCgCCGGg-GCCGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 247 0.69 0.293794
Target:  5'- gGGCCCggcugcggcgGCGGCUgCGGCGGCgGcUGCg -3'
miRNA:   3'- -CCGGG----------CGCCGGgGCCGCUGgCaGCGg -5'
23715 5' -67 NC_005261.1 + 345 0.75 0.117424
Target:  5'- cGGCCCGCagcccGGCgcggCCCGGCGGCgGUgGCg -3'
miRNA:   3'- -CCGGGCG-----CCG----GGGCCGCUGgCAgCGg -5'
23715 5' -67 NC_005261.1 + 652 0.68 0.32656
Target:  5'- aGCgCCGCGuCCCCGGCG-CCGaguccUgGCCc -3'
miRNA:   3'- cCG-GGCGCcGGGGCCGCuGGC-----AgCGG- -5'
23715 5' -67 NC_005261.1 + 1174 0.75 0.126182
Target:  5'- cGGCCCGC-GCCgCGGCcggGGCCGggGCCg -3'
miRNA:   3'- -CCGGGCGcCGGgGCCG---CUGGCagCGG- -5'
23715 5' -67 NC_005261.1 + 1203 0.69 0.300136
Target:  5'- gGGCgcggCGCGGaccCCCCGccgauGCcGCCGUCGCCg -3'
miRNA:   3'- -CCGg---GCGCC---GGGGC-----CGcUGGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 1279 0.71 0.215775
Target:  5'- uGCCgGCGcCCaggCCGGCGGggcucCCGUCGCCg -3'
miRNA:   3'- cCGGgCGCcGG---GGCCGCU-----GGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 1399 0.78 0.075761
Target:  5'- gGGCgCCGCGGCCgCGGCGGCgGcgggggcggCGCCc -3'
miRNA:   3'- -CCG-GGCGCCGGgGCCGCUGgCa--------GCGG- -5'
23715 5' -67 NC_005261.1 + 1461 0.71 0.230847
Target:  5'- cGGCgUGCGGCUCCagcagcGCGGCCG-CGCa -3'
miRNA:   3'- -CCGgGCGCCGGGGc-----CGCUGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 1544 0.67 0.407041
Target:  5'- cGCCCGCaGGCCagguacaCCGGCcGCagCGgcgCGCCg -3'
miRNA:   3'- cCGGGCG-CCGG-------GGCCGcUG--GCa--GCGG- -5'
23715 5' -67 NC_005261.1 + 1592 0.66 0.440368
Target:  5'- cGGUUgGCGGCgCggUGGCuGGCCGccUCGCCc -3'
miRNA:   3'- -CCGGgCGCCGgG--GCCG-CUGGC--AGCGG- -5'
23715 5' -67 NC_005261.1 + 1740 0.68 0.347485
Target:  5'- cGGUgCGCGGgCCCaGGCG--CGUgGCCa -3'
miRNA:   3'- -CCGgGCGCCgGGG-CCGCugGCAgCGG- -5'
23715 5' -67 NC_005261.1 + 1782 0.69 0.287556
Target:  5'- uGGCgCCGCGGCagagCCGcaGCGGCgG-CGCCc -3'
miRNA:   3'- -CCG-GGCGCCGg---GGC--CGCUGgCaGCGG- -5'
23715 5' -67 NC_005261.1 + 1830 0.69 0.287556
Target:  5'- cGUaaGCGGCCUCGGCGcGCgCGaaggCGCCg -3'
miRNA:   3'- cCGggCGCCGGGGCCGC-UG-GCa---GCGG- -5'
23715 5' -67 NC_005261.1 + 1976 0.71 0.215775
Target:  5'- uGCCCGaCGGCCgggccaUCGGCGGCCaguUCGCg -3'
miRNA:   3'- cCGGGC-GCCGG------GGCCGCUGGc--AGCGg -5'
23715 5' -67 NC_005261.1 + 2044 0.69 0.313137
Target:  5'- cGCgCCGCGGCCagccgcaGGCagagguacucGACCG-CGCCg -3'
miRNA:   3'- cCG-GGCGCCGGgg-----CCG----------CUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 2153 0.67 0.376846
Target:  5'- cGCCCGUccaggacccGGCCCaGGCGugCGagucggCGCUc -3'
miRNA:   3'- cCGGGCG---------CCGGGgCCGCugGCa-----GCGG- -5'
23715 5' -67 NC_005261.1 + 2233 0.71 0.236065
Target:  5'- aGCCCGCcGCgCaCCGGCGGCCacucagGcCGCCg -3'
miRNA:   3'- cCGGGCGcCG-G-GGCCGCUGG------CaGCGG- -5'
23715 5' -67 NC_005261.1 + 2408 0.77 0.087774
Target:  5'- cGCCCGCgGGCCCCGcGCGGCgGcggGCCg -3'
miRNA:   3'- cCGGGCG-CCGGGGC-CGCUGgCag-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.