miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 138016 0.75 0.117424
Target:  5'- cGGCCCGCagcccGGCgcggCCCGGCGGCgGUgGCg -3'
miRNA:   3'- -CCGGGCG-----CCG----GGGCCGCUGgCAgCGg -5'
23715 5' -67 NC_005261.1 + 137930 0.69 0.293794
Target:  5'- gGGCCCggcugcggcgGCGGCUgCGGCGGCgGcUGCg -3'
miRNA:   3'- -CCGGG----------CGCCGGgGCCGCUGgCaGCGg -5'
23715 5' -67 NC_005261.1 + 137877 0.7 0.275395
Target:  5'- -uCCCGgGGCCagCGGUG-CCGcCGCCg -3'
miRNA:   3'- ccGGGCgCCGGg-GCCGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 137778 0.7 0.275395
Target:  5'- gGGCgCGCccccgGGCCCCGcCGcCCG-CGCCg -3'
miRNA:   3'- -CCGgGCG-----CCGGGGCcGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 137707 0.66 0.440368
Target:  5'- gGGcCCCGCGcGaCCCCGGgGGgUGUUuuuuggggggggGCCg -3'
miRNA:   3'- -CC-GGGCGC-C-GGGGCCgCUgGCAG------------CGG- -5'
23715 5' -67 NC_005261.1 + 137663 0.68 0.340405
Target:  5'- cGGCgCCGCGcGaCCCCGG-GGCCccccacCGCCc -3'
miRNA:   3'- -CCG-GGCGC-C-GGGGCCgCUGGca----GCGG- -5'
23715 5' -67 NC_005261.1 + 137011 0.69 0.285706
Target:  5'- cGGCCggagagCGCGGCCagcagaaCGGCGucgguggagggcggACCGUCGgCa -3'
miRNA:   3'- -CCGG------GCGCCGGg------GCCGC--------------UGGCAGCgG- -5'
23715 5' -67 NC_005261.1 + 136916 0.71 0.206202
Target:  5'- gGGCCgCGCGGCCgCGGCGcauguggugguACaugggccgCGUCGUCg -3'
miRNA:   3'- -CCGG-GCGCCGGgGCCGC-----------UG--------GCAGCGG- -5'
23715 5' -67 NC_005261.1 + 136422 0.67 0.392141
Target:  5'- aGCCgcaguCGCaGGCCCCcucGCGGgCGUCGCa -3'
miRNA:   3'- cCGG-----GCG-CCGGGGc--CGCUgGCAGCGg -5'
23715 5' -67 NC_005261.1 + 135887 0.7 0.241381
Target:  5'- aGGCCUGCGGCagcacgaCGuGCgGGCUGgUCGCCa -3'
miRNA:   3'- -CCGGGCGCCGgg-----GC-CG-CUGGC-AGCGG- -5'
23715 5' -67 NC_005261.1 + 135278 0.72 0.183866
Target:  5'- cGGCCUGUgcagaacggcgGGUUCCGcGCGACCGgcgugUCGCCc -3'
miRNA:   3'- -CCGGGCG-----------CCGGGGC-CGCUGGC-----AGCGG- -5'
23715 5' -67 NC_005261.1 + 135087 0.76 0.09444
Target:  5'- gGGCUCGCGG-CCCGGCGGCgGagCGCg -3'
miRNA:   3'- -CCGGGCGCCgGGGCCGCUGgCa-GCGg -5'
23715 5' -67 NC_005261.1 + 135018 0.78 0.073919
Target:  5'- gGGCCCgcacGCGGCCgCGGCGgcgagGCCGaCGCCu -3'
miRNA:   3'- -CCGGG----CGCCGGgGCCGC-----UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 134569 0.7 0.257364
Target:  5'- cGGCgCCGCGGCugcgcagggcgggCCUGGCGAgCauaaagCGCCg -3'
miRNA:   3'- -CCG-GGCGCCG-------------GGGCCGCUgGca----GCGG- -5'
23715 5' -67 NC_005261.1 + 134208 0.75 0.114633
Target:  5'- cGGCgCGCGGgUCgCGGCGGCCGgcagCGUCg -3'
miRNA:   3'- -CCGgGCGCCgGG-GCCGCUGGCa---GCGG- -5'
23715 5' -67 NC_005261.1 + 134058 0.67 0.402297
Target:  5'- cGGCCCguacacgaagcucgcGCGGCucaugugcgagcuCUCGGCGcGCCGgcgcgcgcUCGCCg -3'
miRNA:   3'- -CCGGG---------------CGCCG-------------GGGCCGC-UGGC--------AGCGG- -5'
23715 5' -67 NC_005261.1 + 133896 0.72 0.201554
Target:  5'- aGCCCGCGGCgcgcugcuggCCUGGCuGCUGUaCGUCg -3'
miRNA:   3'- cCGGGCGCCG----------GGGCCGcUGGCA-GCGG- -5'
23715 5' -67 NC_005261.1 + 133829 0.73 0.167563
Target:  5'- cGCUgCGCGGCCgCGuGCGcGCCGUgGCCg -3'
miRNA:   3'- cCGG-GCGCCGGgGC-CGC-UGGCAgCGG- -5'
23715 5' -67 NC_005261.1 + 133704 0.69 0.293794
Target:  5'- aGCUgCGCGaCCCCGGCG-CCGUCuaCg -3'
miRNA:   3'- cCGG-GCGCcGGGGCCGCuGGCAGcgG- -5'
23715 5' -67 NC_005261.1 + 133396 0.69 0.287556
Target:  5'- gGGCgCGCGGCCCaaaacaaGGC--CCGcUCGCUg -3'
miRNA:   3'- -CCGgGCGCCGGGg------CCGcuGGC-AGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.