Results 1 - 20 of 715 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23715 | 5' | -67 | NC_005261.1 | + | 138016 | 0.75 | 0.117424 |
Target: 5'- cGGCCCGCagcccGGCgcggCCCGGCGGCgGUgGCg -3' miRNA: 3'- -CCGGGCG-----CCG----GGGCCGCUGgCAgCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 137930 | 0.69 | 0.293794 |
Target: 5'- gGGCCCggcugcggcgGCGGCUgCGGCGGCgGcUGCg -3' miRNA: 3'- -CCGGG----------CGCCGGgGCCGCUGgCaGCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 137877 | 0.7 | 0.275395 |
Target: 5'- -uCCCGgGGCCagCGGUG-CCGcCGCCg -3' miRNA: 3'- ccGGGCgCCGGg-GCCGCuGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 137778 | 0.7 | 0.275395 |
Target: 5'- gGGCgCGCccccgGGCCCCGcCGcCCG-CGCCg -3' miRNA: 3'- -CCGgGCG-----CCGGGGCcGCuGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 137707 | 0.66 | 0.440368 |
Target: 5'- gGGcCCCGCGcGaCCCCGGgGGgUGUUuuuuggggggggGCCg -3' miRNA: 3'- -CC-GGGCGC-C-GGGGCCgCUgGCAG------------CGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 137663 | 0.68 | 0.340405 |
Target: 5'- cGGCgCCGCGcGaCCCCGG-GGCCccccacCGCCc -3' miRNA: 3'- -CCG-GGCGC-C-GGGGCCgCUGGca----GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 137011 | 0.69 | 0.285706 |
Target: 5'- cGGCCggagagCGCGGCCagcagaaCGGCGucgguggagggcggACCGUCGgCa -3' miRNA: 3'- -CCGG------GCGCCGGg------GCCGC--------------UGGCAGCgG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 136916 | 0.71 | 0.206202 |
Target: 5'- gGGCCgCGCGGCCgCGGCGcauguggugguACaugggccgCGUCGUCg -3' miRNA: 3'- -CCGG-GCGCCGGgGCCGC-----------UG--------GCAGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 136422 | 0.67 | 0.392141 |
Target: 5'- aGCCgcaguCGCaGGCCCCcucGCGGgCGUCGCa -3' miRNA: 3'- cCGG-----GCG-CCGGGGc--CGCUgGCAGCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 135887 | 0.7 | 0.241381 |
Target: 5'- aGGCCUGCGGCagcacgaCGuGCgGGCUGgUCGCCa -3' miRNA: 3'- -CCGGGCGCCGgg-----GC-CG-CUGGC-AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 135278 | 0.72 | 0.183866 |
Target: 5'- cGGCCUGUgcagaacggcgGGUUCCGcGCGACCGgcgugUCGCCc -3' miRNA: 3'- -CCGGGCG-----------CCGGGGC-CGCUGGC-----AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 135087 | 0.76 | 0.09444 |
Target: 5'- gGGCUCGCGG-CCCGGCGGCgGagCGCg -3' miRNA: 3'- -CCGGGCGCCgGGGCCGCUGgCa-GCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 135018 | 0.78 | 0.073919 |
Target: 5'- gGGCCCgcacGCGGCCgCGGCGgcgagGCCGaCGCCu -3' miRNA: 3'- -CCGGG----CGCCGGgGCCGC-----UGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 134569 | 0.7 | 0.257364 |
Target: 5'- cGGCgCCGCGGCugcgcagggcgggCCUGGCGAgCauaaagCGCCg -3' miRNA: 3'- -CCG-GGCGCCG-------------GGGCCGCUgGca----GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 134208 | 0.75 | 0.114633 |
Target: 5'- cGGCgCGCGGgUCgCGGCGGCCGgcagCGUCg -3' miRNA: 3'- -CCGgGCGCCgGG-GCCGCUGGCa---GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 134058 | 0.67 | 0.402297 |
Target: 5'- cGGCCCguacacgaagcucgcGCGGCucaugugcgagcuCUCGGCGcGCCGgcgcgcgcUCGCCg -3' miRNA: 3'- -CCGGG---------------CGCCG-------------GGGCCGC-UGGC--------AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 133896 | 0.72 | 0.201554 |
Target: 5'- aGCCCGCGGCgcgcugcuggCCUGGCuGCUGUaCGUCg -3' miRNA: 3'- cCGGGCGCCG----------GGGCCGcUGGCA-GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 133829 | 0.73 | 0.167563 |
Target: 5'- cGCUgCGCGGCCgCGuGCGcGCCGUgGCCg -3' miRNA: 3'- cCGG-GCGCCGGgGC-CGC-UGGCAgCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 133704 | 0.69 | 0.293794 |
Target: 5'- aGCUgCGCGaCCCCGGCG-CCGUCuaCg -3' miRNA: 3'- cCGG-GCGCcGGGGCCGCuGGCAGcgG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 133396 | 0.69 | 0.287556 |
Target: 5'- gGGCgCGCGGCCCaaaacaaGGC--CCGcUCGCUg -3' miRNA: 3'- -CCGgGCGCCGGGg------CCGcuGGC-AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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