Results 21 - 40 of 715 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23715 | 5' | -67 | NC_005261.1 | + | 2503 | 0.68 | 0.364903 |
Target: 5'- uGGUCCGCGaGCCgCGccGCGACCucggggcggcaguagGcCGCCa -3' miRNA: 3'- -CCGGGCGC-CGGgGC--CGCUGG---------------CaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 2638 | 0.67 | 0.399939 |
Target: 5'- gGGCCCagcacgcggGCGGgCagCGGCGGCUccCGCCg -3' miRNA: 3'- -CCGGG---------CGCCgGg-GCCGCUGGcaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 2681 | 0.69 | 0.281424 |
Target: 5'- gGGaCCCgGCGGCgCgCCGGCuuuuGGCCGgCGCCn -3' miRNA: 3'- -CC-GGG-CGCCG-G-GGCCG----CUGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 2716 | 0.76 | 0.09444 |
Target: 5'- gGGCCCcUGGCCCCGGCcGACUugcgcuugCGCCg -3' miRNA: 3'- -CCGGGcGCCGGGGCCG-CUGGca------GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 2776 | 0.75 | 0.126182 |
Target: 5'- aGGCCCGCccccgaggGGCUgccgCCGGCGGCCGggagggGCCg -3' miRNA: 3'- -CCGGGCG--------CCGG----GGCCGCUGGCag----CGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 2822 | 0.71 | 0.219215 |
Target: 5'- cGGCCCcagcccgagcucggGCGGCagggCCGGCGGCCcccUCGUCc -3' miRNA: 3'- -CCGGG--------------CGCCGg---GGCCGCUGGc--AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 2994 | 0.71 | 0.220703 |
Target: 5'- cGGCCUgGCGG-CCCGGCG-CCGggGCUc -3' miRNA: 3'- -CCGGG-CGCCgGGGCCGCuGGCagCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 3154 | 0.75 | 0.126182 |
Target: 5'- cGUCCGaGGCCCCGGCGGCgG-CgGCCu -3' miRNA: 3'- cCGGGCgCCGGGGCCGCUGgCaG-CGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 3302 | 0.67 | 0.369351 |
Target: 5'- cGCCCGCGguGCCCCGGCccgcaUGUCcuCCa -3' miRNA: 3'- cCGGGCGC--CGGGGCCGcug--GCAGc-GG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 3342 | 0.75 | 0.111904 |
Target: 5'- cGCgCCGCGGCgCCCGGCGcGCCG--GCCu -3' miRNA: 3'- cCG-GGCGCCG-GGGCCGC-UGGCagCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 3509 | 0.67 | 0.369351 |
Target: 5'- cGCCagCGCGGCCgCCuccagcgcGGCGGCCGccUCGgCg -3' miRNA: 3'- cCGG--GCGCCGG-GG--------CCGCUGGC--AGCgG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 3725 | 0.66 | 0.431274 |
Target: 5'- cGCgCCGCuGCCggacgcgCCGGCGgcgcACCG-CGCCg -3' miRNA: 3'- cCG-GGCGcCGG-------GGCCGC----UGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 3833 | 0.74 | 0.135542 |
Target: 5'- gGGCCCG-GGCgCUGGCGGCagcggCGCCg -3' miRNA: 3'- -CCGGGCgCCGgGGCCGCUGgca--GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 3895 | 0.71 | 0.220703 |
Target: 5'- cGGCgagCGCGGCgCgGGCGcCCG-CGCCg -3' miRNA: 3'- -CCGg--GCGCCGgGgCCGCuGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 4045 | 0.67 | 0.381392 |
Target: 5'- cGCCCacagcgcguucugcGCGGCCauggcguccccgaCCGGCGGCagcggCGCCg -3' miRNA: 3'- cCGGG--------------CGCCGG-------------GGCCGCUGgca--GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 4123 | 0.7 | 0.252313 |
Target: 5'- --gCUGUGGCCCCGGCaGCCcugcacgCGCCg -3' miRNA: 3'- ccgGGCGCCGGGGCCGcUGGca-----GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 4181 | 0.66 | 0.465713 |
Target: 5'- gGGCCCGCGaGCUUCGcGCucugcagccaGGCCauggcGUCGCg -3' miRNA: 3'- -CCGGGCGC-CGGGGC-CG----------CUGG-----CAGCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 4300 | 0.75 | 0.111904 |
Target: 5'- gGGcCCCGCGGCCgCCGcguagcgcGCGGCCGccUCGCg -3' miRNA: 3'- -CC-GGGCGCCGG-GGC--------CGCUGGC--AGCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 4350 | 0.68 | 0.361959 |
Target: 5'- aGUCCcagaGGCCCUcGCGAgUGUCGCCc -3' miRNA: 3'- cCGGGcg--CCGGGGcCGCUgGCAGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 4391 | 0.67 | 0.392141 |
Target: 5'- cGCaCGCGGCCgggCGGCGGCgGcgCGCUg -3' miRNA: 3'- cCGgGCGCCGGg--GCCGCUGgCa-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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