miRNA display CGI


Results 21 - 40 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 2503 0.68 0.364903
Target:  5'- uGGUCCGCGaGCCgCGccGCGACCucggggcggcaguagGcCGCCa -3'
miRNA:   3'- -CCGGGCGC-CGGgGC--CGCUGG---------------CaGCGG- -5'
23715 5' -67 NC_005261.1 + 2638 0.67 0.399939
Target:  5'- gGGCCCagcacgcggGCGGgCagCGGCGGCUccCGCCg -3'
miRNA:   3'- -CCGGG---------CGCCgGg-GCCGCUGGcaGCGG- -5'
23715 5' -67 NC_005261.1 + 2681 0.69 0.281424
Target:  5'- gGGaCCCgGCGGCgCgCCGGCuuuuGGCCGgCGCCn -3'
miRNA:   3'- -CC-GGG-CGCCG-G-GGCCG----CUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 2716 0.76 0.09444
Target:  5'- gGGCCCcUGGCCCCGGCcGACUugcgcuugCGCCg -3'
miRNA:   3'- -CCGGGcGCCGGGGCCG-CUGGca------GCGG- -5'
23715 5' -67 NC_005261.1 + 2776 0.75 0.126182
Target:  5'- aGGCCCGCccccgaggGGCUgccgCCGGCGGCCGggagggGCCg -3'
miRNA:   3'- -CCGGGCG--------CCGG----GGCCGCUGGCag----CGG- -5'
23715 5' -67 NC_005261.1 + 2822 0.71 0.219215
Target:  5'- cGGCCCcagcccgagcucggGCGGCagggCCGGCGGCCcccUCGUCc -3'
miRNA:   3'- -CCGGG--------------CGCCGg---GGCCGCUGGc--AGCGG- -5'
23715 5' -67 NC_005261.1 + 2994 0.71 0.220703
Target:  5'- cGGCCUgGCGG-CCCGGCG-CCGggGCUc -3'
miRNA:   3'- -CCGGG-CGCCgGGGCCGCuGGCagCGG- -5'
23715 5' -67 NC_005261.1 + 3154 0.75 0.126182
Target:  5'- cGUCCGaGGCCCCGGCGGCgG-CgGCCu -3'
miRNA:   3'- cCGGGCgCCGGGGCCGCUGgCaG-CGG- -5'
23715 5' -67 NC_005261.1 + 3302 0.67 0.369351
Target:  5'- cGCCCGCGguGCCCCGGCccgcaUGUCcuCCa -3'
miRNA:   3'- cCGGGCGC--CGGGGCCGcug--GCAGc-GG- -5'
23715 5' -67 NC_005261.1 + 3342 0.75 0.111904
Target:  5'- cGCgCCGCGGCgCCCGGCGcGCCG--GCCu -3'
miRNA:   3'- cCG-GGCGCCG-GGGCCGC-UGGCagCGG- -5'
23715 5' -67 NC_005261.1 + 3509 0.67 0.369351
Target:  5'- cGCCagCGCGGCCgCCuccagcgcGGCGGCCGccUCGgCg -3'
miRNA:   3'- cCGG--GCGCCGG-GG--------CCGCUGGC--AGCgG- -5'
23715 5' -67 NC_005261.1 + 3725 0.66 0.431274
Target:  5'- cGCgCCGCuGCCggacgcgCCGGCGgcgcACCG-CGCCg -3'
miRNA:   3'- cCG-GGCGcCGG-------GGCCGC----UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 3833 0.74 0.135542
Target:  5'- gGGCCCG-GGCgCUGGCGGCagcggCGCCg -3'
miRNA:   3'- -CCGGGCgCCGgGGCCGCUGgca--GCGG- -5'
23715 5' -67 NC_005261.1 + 3895 0.71 0.220703
Target:  5'- cGGCgagCGCGGCgCgGGCGcCCG-CGCCg -3'
miRNA:   3'- -CCGg--GCGCCGgGgCCGCuGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 4045 0.67 0.381392
Target:  5'- cGCCCacagcgcguucugcGCGGCCauggcguccccgaCCGGCGGCagcggCGCCg -3'
miRNA:   3'- cCGGG--------------CGCCGG-------------GGCCGCUGgca--GCGG- -5'
23715 5' -67 NC_005261.1 + 4123 0.7 0.252313
Target:  5'- --gCUGUGGCCCCGGCaGCCcugcacgCGCCg -3'
miRNA:   3'- ccgGGCGCCGGGGCCGcUGGca-----GCGG- -5'
23715 5' -67 NC_005261.1 + 4181 0.66 0.465713
Target:  5'- gGGCCCGCGaGCUUCGcGCucugcagccaGGCCauggcGUCGCg -3'
miRNA:   3'- -CCGGGCGC-CGGGGC-CG----------CUGG-----CAGCGg -5'
23715 5' -67 NC_005261.1 + 4300 0.75 0.111904
Target:  5'- gGGcCCCGCGGCCgCCGcguagcgcGCGGCCGccUCGCg -3'
miRNA:   3'- -CC-GGGCGCCGG-GGC--------CGCUGGC--AGCGg -5'
23715 5' -67 NC_005261.1 + 4350 0.68 0.361959
Target:  5'- aGUCCcagaGGCCCUcGCGAgUGUCGCCc -3'
miRNA:   3'- cCGGGcg--CCGGGGcCGCUgGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 4391 0.67 0.392141
Target:  5'- cGCaCGCGGCCgggCGGCGGCgGcgCGCUg -3'
miRNA:   3'- cCGgGCGCCGGg--GCCGCUGgCa-GCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.