miRNA display CGI


Results 21 - 40 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 84371 0.8 0.048478
Target:  5'- cGCCCGCGGgCUCGGCcucGGCCGcCGCCu -3'
miRNA:   3'- cCGGGCGCCgGGGCCG---CUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 28794 0.8 0.048478
Target:  5'- cGCUCGCGGCCgCGGCGgaggcaGCCGcCGCCg -3'
miRNA:   3'- cCGGGCGCCGGgGCCGC------UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 98297 0.8 0.049703
Target:  5'- cGUCCGCGGCCUCGGgGGCgGgCGCCg -3'
miRNA:   3'- cCGGGCGCCGGGGCCgCUGgCaGCGG- -5'
23715 5' -67 NC_005261.1 + 106220 0.8 0.052245
Target:  5'- cGCCCGCGGCCgCCuGGCGcgGCCGccgCGCCc -3'
miRNA:   3'- cCGGGCGCCGG-GG-CCGC--UGGCa--GCGG- -5'
23715 5' -67 NC_005261.1 + 121073 0.8 0.053563
Target:  5'- uGUgCGCGGCgCCGGCGGCCGccagCGCCu -3'
miRNA:   3'- cCGgGCGCCGgGGCCGCUGGCa---GCGG- -5'
23715 5' -67 NC_005261.1 + 30352 0.8 0.056297
Target:  5'- cGCUCGCGGCCCUGaaGGCCGgcgCGCCg -3'
miRNA:   3'- cCGGGCGCCGGGGCcgCUGGCa--GCGG- -5'
23715 5' -67 NC_005261.1 + 33067 0.8 0.056297
Target:  5'- cGCCggggaCGCGGCgCUGGCGGCCGcCGCCa -3'
miRNA:   3'- cCGG-----GCGCCGgGGCCGCUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 32533 0.79 0.057714
Target:  5'- cGGCCC-CGGCCCCGGCcgcggcgcgGGCCGgcgCGCg -3'
miRNA:   3'- -CCGGGcGCCGGGGCCG---------CUGGCa--GCGg -5'
23715 5' -67 NC_005261.1 + 68129 0.79 0.057714
Target:  5'- cGGgCCGCGGCg-CGGCGACCG-CGCCg -3'
miRNA:   3'- -CCgGGCGCCGggGCCGCUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 102315 0.79 0.059166
Target:  5'- cGCgCCGCGGCCgCGGCGcgcaGCCG-CGCCa -3'
miRNA:   3'- cCG-GGCGCCGGgGCCGC----UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 103556 0.79 0.060653
Target:  5'- gGGCCCaGgGGCCCCGuGCcGCCGcCGCCc -3'
miRNA:   3'- -CCGGG-CgCCGGGGC-CGcUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 97526 0.78 0.066804
Target:  5'- cGGCUCgccgcgaucgGCGGCCCCGGCGGugccggcCCGUcCGCCc -3'
miRNA:   3'- -CCGGG----------CGCCGGGGCCGCU-------GGCA-GCGG- -5'
23715 5' -67 NC_005261.1 + 70816 0.78 0.06697
Target:  5'- cGCCgGCGGCCCCgGGCGcGCCGgcgCGCg -3'
miRNA:   3'- cCGGgCGCCGGGG-CCGC-UGGCa--GCGg -5'
23715 5' -67 NC_005261.1 + 125319 0.78 0.06697
Target:  5'- cGCuCCGCGGCCUCGGCGuCCGcagCGCg -3'
miRNA:   3'- cCG-GGCGCCGGGGCCGCuGGCa--GCGg -5'
23715 5' -67 NC_005261.1 + 59407 0.78 0.068646
Target:  5'- gGGCUCGcCGGCgCCGGCG-CUGUCGCg -3'
miRNA:   3'- -CCGGGC-GCCGgGGCCGCuGGCAGCGg -5'
23715 5' -67 NC_005261.1 + 12135 0.78 0.068646
Target:  5'- cGCCCGCcGCCgCGGCGGCCG-CGCa -3'
miRNA:   3'- cCGGGCGcCGGgGCCGCUGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 107667 0.78 0.070362
Target:  5'- -cUCCGCGGCCCCGcCGGgCGUUGCCg -3'
miRNA:   3'- ccGGGCGCCGGGGCcGCUgGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 123058 0.78 0.070362
Target:  5'- uGCCCGCcgcucgaugaGGCCCCgagaGGCGGCCGgccaCGCCa -3'
miRNA:   3'- cCGGGCG----------CCGGGG----CCGCUGGCa---GCGG- -5'
23715 5' -67 NC_005261.1 + 118866 0.78 0.07106
Target:  5'- cGCCCGCGGCCCUGGCcucGGCCaccgcgggcgcgcugGUgGCCu -3'
miRNA:   3'- cCGGGCGCCGGGGCCG---CUGG---------------CAgCGG- -5'
23715 5' -67 NC_005261.1 + 120602 0.78 0.072119
Target:  5'- cGCCUGCGGCCUCGGCG-CCGUggggcuccUGCUg -3'
miRNA:   3'- cCGGGCGCCGGGGCCGCuGGCA--------GCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.