Results 21 - 40 of 715 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23715 | 5' | -67 | NC_005261.1 | + | 84371 | 0.8 | 0.048478 |
Target: 5'- cGCCCGCGGgCUCGGCcucGGCCGcCGCCu -3' miRNA: 3'- cCGGGCGCCgGGGCCG---CUGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 28794 | 0.8 | 0.048478 |
Target: 5'- cGCUCGCGGCCgCGGCGgaggcaGCCGcCGCCg -3' miRNA: 3'- cCGGGCGCCGGgGCCGC------UGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 98297 | 0.8 | 0.049703 |
Target: 5'- cGUCCGCGGCCUCGGgGGCgGgCGCCg -3' miRNA: 3'- cCGGGCGCCGGGGCCgCUGgCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 106220 | 0.8 | 0.052245 |
Target: 5'- cGCCCGCGGCCgCCuGGCGcgGCCGccgCGCCc -3' miRNA: 3'- cCGGGCGCCGG-GG-CCGC--UGGCa--GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 121073 | 0.8 | 0.053563 |
Target: 5'- uGUgCGCGGCgCCGGCGGCCGccagCGCCu -3' miRNA: 3'- cCGgGCGCCGgGGCCGCUGGCa---GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 30352 | 0.8 | 0.056297 |
Target: 5'- cGCUCGCGGCCCUGaaGGCCGgcgCGCCg -3' miRNA: 3'- cCGGGCGCCGGGGCcgCUGGCa--GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 33067 | 0.8 | 0.056297 |
Target: 5'- cGCCggggaCGCGGCgCUGGCGGCCGcCGCCa -3' miRNA: 3'- cCGG-----GCGCCGgGGCCGCUGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 32533 | 0.79 | 0.057714 |
Target: 5'- cGGCCC-CGGCCCCGGCcgcggcgcgGGCCGgcgCGCg -3' miRNA: 3'- -CCGGGcGCCGGGGCCG---------CUGGCa--GCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 68129 | 0.79 | 0.057714 |
Target: 5'- cGGgCCGCGGCg-CGGCGACCG-CGCCg -3' miRNA: 3'- -CCgGGCGCCGggGCCGCUGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 102315 | 0.79 | 0.059166 |
Target: 5'- cGCgCCGCGGCCgCGGCGcgcaGCCG-CGCCa -3' miRNA: 3'- cCG-GGCGCCGGgGCCGC----UGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 103556 | 0.79 | 0.060653 |
Target: 5'- gGGCCCaGgGGCCCCGuGCcGCCGcCGCCc -3' miRNA: 3'- -CCGGG-CgCCGGGGC-CGcUGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 97526 | 0.78 | 0.066804 |
Target: 5'- cGGCUCgccgcgaucgGCGGCCCCGGCGGugccggcCCGUcCGCCc -3' miRNA: 3'- -CCGGG----------CGCCGGGGCCGCU-------GGCA-GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 70816 | 0.78 | 0.06697 |
Target: 5'- cGCCgGCGGCCCCgGGCGcGCCGgcgCGCg -3' miRNA: 3'- cCGGgCGCCGGGG-CCGC-UGGCa--GCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 125319 | 0.78 | 0.06697 |
Target: 5'- cGCuCCGCGGCCUCGGCGuCCGcagCGCg -3' miRNA: 3'- cCG-GGCGCCGGGGCCGCuGGCa--GCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 59407 | 0.78 | 0.068646 |
Target: 5'- gGGCUCGcCGGCgCCGGCG-CUGUCGCg -3' miRNA: 3'- -CCGGGC-GCCGgGGCCGCuGGCAGCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 12135 | 0.78 | 0.068646 |
Target: 5'- cGCCCGCcGCCgCGGCGGCCG-CGCa -3' miRNA: 3'- cCGGGCGcCGGgGCCGCUGGCaGCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 107667 | 0.78 | 0.070362 |
Target: 5'- -cUCCGCGGCCCCGcCGGgCGUUGCCg -3' miRNA: 3'- ccGGGCGCCGGGGCcGCUgGCAGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 123058 | 0.78 | 0.070362 |
Target: 5'- uGCCCGCcgcucgaugaGGCCCCgagaGGCGGCCGgccaCGCCa -3' miRNA: 3'- cCGGGCG----------CCGGGG----CCGCUGGCa---GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 118866 | 0.78 | 0.07106 |
Target: 5'- cGCCCGCGGCCCUGGCcucGGCCaccgcgggcgcgcugGUgGCCu -3' miRNA: 3'- cCGGGCGCCGGGGCCG---CUGG---------------CAgCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 120602 | 0.78 | 0.072119 |
Target: 5'- cGCCUGCGGCCUCGGCG-CCGUggggcuccUGCUg -3' miRNA: 3'- cCGGGCGCCGGGGCCGCuGGCA--------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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