miRNA display CGI


Results 21 - 40 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 97890 0.66 0.457179
Target:  5'- aGCCC-CGGgC-CGGCgGACCGUcugggCGCCg -3'
miRNA:   3'- cCGGGcGCCgGgGCCG-CUGGCA-----GCGG- -5'
23715 5' -67 NC_005261.1 + 105118 0.66 0.457179
Target:  5'- uGCCCGCgcgGGCgCgGGCcGCCGgcgCGCg -3'
miRNA:   3'- cCGGGCG---CCGgGgCCGcUGGCa--GCGg -5'
23715 5' -67 NC_005261.1 + 55038 0.66 0.457179
Target:  5'- cGGCCCcgcgcagcugcGCGGggCCGGCGAgcUCGgcCGCCg -3'
miRNA:   3'- -CCGGG-----------CGCCggGGCCGCU--GGCa-GCGG- -5'
23715 5' -67 NC_005261.1 + 23008 0.66 0.457179
Target:  5'- gGGCCCggagGCGGCCC--GCGaacGCCuUUGCCg -3'
miRNA:   3'- -CCGGG----CGCCGGGgcCGC---UGGcAGCGG- -5'
23715 5' -67 NC_005261.1 + 59871 0.66 0.457179
Target:  5'- cGGCCuCGUacgGGUgCCGGCGGgcagcagcUCGUCGUa -3'
miRNA:   3'- -CCGG-GCG---CCGgGGCCGCU--------GGCAGCGg -5'
23715 5' -67 NC_005261.1 + 92146 0.66 0.457179
Target:  5'- gGGCCa--GGaCCUCGGCGAgCGcgCGCUc -3'
miRNA:   3'- -CCGGgcgCC-GGGGCCGCUgGCa-GCGG- -5'
23715 5' -67 NC_005261.1 + 43278 0.66 0.457179
Target:  5'- gGGCgUCGCGGCCgCCuuucccgcggggGGCG-CCGgcaGCCc -3'
miRNA:   3'- -CCG-GGCGCCGG-GG------------CCGCuGGCag-CGG- -5'
23715 5' -67 NC_005261.1 + 127903 0.66 0.457179
Target:  5'- gGGCCCG-GGCCUgGGCuugGGCuCGg-GCCc -3'
miRNA:   3'- -CCGGGCgCCGGGgCCG---CUG-GCagCGG- -5'
23715 5' -67 NC_005261.1 + 125809 0.66 0.457179
Target:  5'- uGGgCCGgGGCCgCC-GCGAgCGggGCCg -3'
miRNA:   3'- -CCgGGCgCCGG-GGcCGCUgGCagCGG- -5'
23715 5' -67 NC_005261.1 + 53346 0.66 0.457179
Target:  5'- cGCCCGCccccGCCgCGcuuuCGGCCGcCGCCc -3'
miRNA:   3'- cCGGGCGc---CGGgGCc---GCUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 32423 0.66 0.457179
Target:  5'- cGGCgaCGgGaGCCCCGcCGGCCugggCGCCg -3'
miRNA:   3'- -CCGg-GCgC-CGGGGCcGCUGGca--GCGG- -5'
23715 5' -67 NC_005261.1 + 116162 0.66 0.457179
Target:  5'- aGCgCGCGGUCgCGGCcgcguccccGACgccgcugggcgCGUCGCCg -3'
miRNA:   3'- cCGgGCGCCGGgGCCG---------CUG-----------GCAGCGG- -5'
23715 5' -67 NC_005261.1 + 32612 0.66 0.457179
Target:  5'- cGUCCGCGuCCUCGGaCGacgaGCCGggcUCGCCc -3'
miRNA:   3'- cCGGGCGCcGGGGCC-GC----UGGC---AGCGG- -5'
23715 5' -67 NC_005261.1 + 88596 0.66 0.457179
Target:  5'- aGGCCC--GGCCCggCGGCGccACgGUCGUg -3'
miRNA:   3'- -CCGGGcgCCGGG--GCCGC--UGgCAGCGg -5'
23715 5' -67 NC_005261.1 + 63536 0.66 0.457179
Target:  5'- --aCCGCGGCcugCCCGcGCG-CCGU-GCCc -3'
miRNA:   3'- ccgGGCGCCG---GGGC-CGCuGGCAgCGG- -5'
23715 5' -67 NC_005261.1 + 56216 0.66 0.456331
Target:  5'- cGCCguCGCGGCCCCcaaGCGccaccagACgGUCGUCc -3'
miRNA:   3'- cCGG--GCGCCGGGGc--CGC-------UGgCAGCGG- -5'
23715 5' -67 NC_005261.1 + 89408 0.66 0.454635
Target:  5'- cGGCCuuccucggcgcgugCGCGGCCgCCgGGCuccCCG-CGCCc -3'
miRNA:   3'- -CCGG--------------GCGCCGG-GG-CCGcu-GGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 62823 0.66 0.454635
Target:  5'- cGCCgCGCGGggcaCCGGCGGgggacuggcgcgccCCG-CGCCa -3'
miRNA:   3'- cCGG-GCGCCgg--GGCCGCU--------------GGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 37469 0.66 0.4521
Target:  5'- uGCUCGcCGGCacCCCGGCGuaucgggacuugGCCGUccagguccuugagaaCGCCu -3'
miRNA:   3'- cCGGGC-GCCG--GGGCCGC------------UGGCA---------------GCGG- -5'
23715 5' -67 NC_005261.1 + 85351 0.66 0.44873
Target:  5'- aGCCCaGCGGCCCgcugaGGauguucgcGCCGcCGCCc -3'
miRNA:   3'- cCGGG-CGCCGGGg----CCgc------UGGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.