Results 41 - 60 of 715 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23715 | 5' | -67 | NC_005261.1 | + | 91699 | 0.66 | 0.44873 |
Target: 5'- cGCCUGCGaCagCCGGCugcaaGGCCGgcUCGCCg -3' miRNA: 3'- cCGGGCGCcGg-GGCCG-----CUGGC--AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 47257 | 0.66 | 0.44873 |
Target: 5'- aGGaCCUGCgccGGCCcgCCGGCGAagagCGCCg -3' miRNA: 3'- -CC-GGGCG---CCGG--GGCCGCUggcaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 110011 | 0.66 | 0.44873 |
Target: 5'- cGCCCGcCGGCgCCGcCGuCCuuUCGCCu -3' miRNA: 3'- cCGGGC-GCCGgGGCcGCuGGc-AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 129719 | 0.66 | 0.44873 |
Target: 5'- aGGCCCGcCGGCUgCagcggcagGGCGGCgGg-GCCc -3' miRNA: 3'- -CCGGGC-GCCGGgG--------CCGCUGgCagCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 88560 | 0.66 | 0.44873 |
Target: 5'- -aCCCGa-GCgCCGGCGACgCGUC-CCg -3' miRNA: 3'- ccGGGCgcCGgGGCCGCUG-GCAGcGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 95075 | 0.66 | 0.44873 |
Target: 5'- cGCCCGCGaGCgCgaccgcgaCGGCGagGCCGaUGCCg -3' miRNA: 3'- cCGGGCGC-CGgG--------GCCGC--UGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 85351 | 0.66 | 0.44873 |
Target: 5'- aGCCCaGCGGCCCgcugaGGauguucgcGCCGcCGCCc -3' miRNA: 3'- cCGGG-CGCCGGGg----CCgc------UGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 123224 | 0.66 | 0.44873 |
Target: 5'- cGGCCUGCcGCCUa-GCGGCCGcccaggCGCg -3' miRNA: 3'- -CCGGGCGcCGGGgcCGCUGGCa-----GCGg -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 23805 | 0.66 | 0.447051 |
Target: 5'- aGGCCgGCuggggcgggcuuGCCCCgGGCgGGCCGgcuagggugggcUCGCCg -3' miRNA: 3'- -CCGGgCGc-----------CGGGG-CCG-CUGGC------------AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 57381 | 0.66 | 0.446212 |
Target: 5'- cGCCCGCcagcagcucggggaGcGCgCCCGugauccGCGGCCGgCGCCg -3' miRNA: 3'- cCGGGCG--------------C-CG-GGGC------CGCUGGCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 110243 | 0.66 | 0.446212 |
Target: 5'- gGGCggCGCGGCgCCCGGgGGgcugcgggccucccUCGUgGCCu -3' miRNA: 3'- -CCGg-GCGCCG-GGGCCgCU--------------GGCAgCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 119627 | 0.66 | 0.446212 |
Target: 5'- uGCaCUGCGgcguggccgacaacGCCaCCGGCGGCgCG-CGCCu -3' miRNA: 3'- cCG-GGCGC--------------CGG-GGCCGCUG-GCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 41110 | 0.66 | 0.446212 |
Target: 5'- cGUCCGCGGCgggcccgagcgcuuCCUGcGUGGCgCG-CGCCa -3' miRNA: 3'- cCGGGCGCCG--------------GGGC-CGCUG-GCaGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 1592 | 0.66 | 0.440368 |
Target: 5'- cGGUUgGCGGCgCggUGGCuGGCCGccUCGCCc -3' miRNA: 3'- -CCGGgCGCCGgG--GCCG-CUGGC--AGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 43431 | 0.66 | 0.440368 |
Target: 5'- cGCCgGCGGggagcuggCUCGGCGccuggaCGUCGCCg -3' miRNA: 3'- cCGGgCGCCg-------GGGCCGCug----GCAGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 54999 | 0.66 | 0.440368 |
Target: 5'- cGCCgGCGGCCUCGugcacaacgacGCucCCGUagcCGCCg -3' miRNA: 3'- cCGGgCGCCGGGGC-----------CGcuGGCA---GCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 137707 | 0.66 | 0.440368 |
Target: 5'- gGGcCCCGCGcGaCCCCGGgGGgUGUUuuuuggggggggGCCg -3' miRNA: 3'- -CC-GGGCGC-C-GGGGCCgCUgGCAG------------CGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 131570 | 0.66 | 0.440368 |
Target: 5'- cGCCCgGCuGCCCCccgcGaCGGCCGagGCCu -3' miRNA: 3'- cCGGG-CGcCGGGGc---C-GCUGGCagCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 80003 | 0.66 | 0.440368 |
Target: 5'- cGGCCgagcucacgGUGGUCaCCcgcuuguuGGCGucGCCGUCGCCg -3' miRNA: 3'- -CCGGg--------CGCCGG-GG--------CCGC--UGGCAGCGG- -5' |
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23715 | 5' | -67 | NC_005261.1 | + | 19757 | 0.66 | 0.440368 |
Target: 5'- -uCCCGCgcgGGCgCgGGCc-CCGUCGCCu -3' miRNA: 3'- ccGGGCG---CCGgGgCCGcuGGCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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