miRNA display CGI


Results 41 - 60 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 91699 0.66 0.44873
Target:  5'- cGCCUGCGaCagCCGGCugcaaGGCCGgcUCGCCg -3'
miRNA:   3'- cCGGGCGCcGg-GGCCG-----CUGGC--AGCGG- -5'
23715 5' -67 NC_005261.1 + 47257 0.66 0.44873
Target:  5'- aGGaCCUGCgccGGCCcgCCGGCGAagagCGCCg -3'
miRNA:   3'- -CC-GGGCG---CCGG--GGCCGCUggcaGCGG- -5'
23715 5' -67 NC_005261.1 + 110011 0.66 0.44873
Target:  5'- cGCCCGcCGGCgCCGcCGuCCuuUCGCCu -3'
miRNA:   3'- cCGGGC-GCCGgGGCcGCuGGc-AGCGG- -5'
23715 5' -67 NC_005261.1 + 129719 0.66 0.44873
Target:  5'- aGGCCCGcCGGCUgCagcggcagGGCGGCgGg-GCCc -3'
miRNA:   3'- -CCGGGC-GCCGGgG--------CCGCUGgCagCGG- -5'
23715 5' -67 NC_005261.1 + 88560 0.66 0.44873
Target:  5'- -aCCCGa-GCgCCGGCGACgCGUC-CCg -3'
miRNA:   3'- ccGGGCgcCGgGGCCGCUG-GCAGcGG- -5'
23715 5' -67 NC_005261.1 + 95075 0.66 0.44873
Target:  5'- cGCCCGCGaGCgCgaccgcgaCGGCGagGCCGaUGCCg -3'
miRNA:   3'- cCGGGCGC-CGgG--------GCCGC--UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 85351 0.66 0.44873
Target:  5'- aGCCCaGCGGCCCgcugaGGauguucgcGCCGcCGCCc -3'
miRNA:   3'- cCGGG-CGCCGGGg----CCgc------UGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 123224 0.66 0.44873
Target:  5'- cGGCCUGCcGCCUa-GCGGCCGcccaggCGCg -3'
miRNA:   3'- -CCGGGCGcCGGGgcCGCUGGCa-----GCGg -5'
23715 5' -67 NC_005261.1 + 23805 0.66 0.447051
Target:  5'- aGGCCgGCuggggcgggcuuGCCCCgGGCgGGCCGgcuagggugggcUCGCCg -3'
miRNA:   3'- -CCGGgCGc-----------CGGGG-CCG-CUGGC------------AGCGG- -5'
23715 5' -67 NC_005261.1 + 57381 0.66 0.446212
Target:  5'- cGCCCGCcagcagcucggggaGcGCgCCCGugauccGCGGCCGgCGCCg -3'
miRNA:   3'- cCGGGCG--------------C-CG-GGGC------CGCUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 110243 0.66 0.446212
Target:  5'- gGGCggCGCGGCgCCCGGgGGgcugcgggccucccUCGUgGCCu -3'
miRNA:   3'- -CCGg-GCGCCG-GGGCCgCU--------------GGCAgCGG- -5'
23715 5' -67 NC_005261.1 + 119627 0.66 0.446212
Target:  5'- uGCaCUGCGgcguggccgacaacGCCaCCGGCGGCgCG-CGCCu -3'
miRNA:   3'- cCG-GGCGC--------------CGG-GGCCGCUG-GCaGCGG- -5'
23715 5' -67 NC_005261.1 + 41110 0.66 0.446212
Target:  5'- cGUCCGCGGCgggcccgagcgcuuCCUGcGUGGCgCG-CGCCa -3'
miRNA:   3'- cCGGGCGCCG--------------GGGC-CGCUG-GCaGCGG- -5'
23715 5' -67 NC_005261.1 + 1592 0.66 0.440368
Target:  5'- cGGUUgGCGGCgCggUGGCuGGCCGccUCGCCc -3'
miRNA:   3'- -CCGGgCGCCGgG--GCCG-CUGGC--AGCGG- -5'
23715 5' -67 NC_005261.1 + 43431 0.66 0.440368
Target:  5'- cGCCgGCGGggagcuggCUCGGCGccuggaCGUCGCCg -3'
miRNA:   3'- cCGGgCGCCg-------GGGCCGCug----GCAGCGG- -5'
23715 5' -67 NC_005261.1 + 54999 0.66 0.440368
Target:  5'- cGCCgGCGGCCUCGugcacaacgacGCucCCGUagcCGCCg -3'
miRNA:   3'- cCGGgCGCCGGGGC-----------CGcuGGCA---GCGG- -5'
23715 5' -67 NC_005261.1 + 137707 0.66 0.440368
Target:  5'- gGGcCCCGCGcGaCCCCGGgGGgUGUUuuuuggggggggGCCg -3'
miRNA:   3'- -CC-GGGCGC-C-GGGGCCgCUgGCAG------------CGG- -5'
23715 5' -67 NC_005261.1 + 131570 0.66 0.440368
Target:  5'- cGCCCgGCuGCCCCccgcGaCGGCCGagGCCu -3'
miRNA:   3'- cCGGG-CGcCGGGGc---C-GCUGGCagCGG- -5'
23715 5' -67 NC_005261.1 + 80003 0.66 0.440368
Target:  5'- cGGCCgagcucacgGUGGUCaCCcgcuuguuGGCGucGCCGUCGCCg -3'
miRNA:   3'- -CCGGg--------CGCCGG-GG--------CCGC--UGGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 19757 0.66 0.440368
Target:  5'- -uCCCGCgcgGGCgCgGGCc-CCGUCGCCu -3'
miRNA:   3'- ccGGGCG---CCGgGgCCGcuGGCAGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.