miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23716 5' -60.1 NC_005261.1 + 107674 0.77 0.180886
Target:  5'- gCCCC-GCCGGGcgUUGCCGCCgcGGCg -3'
miRNA:   3'- -GGGGcCGGCUCa-AACGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 91130 0.74 0.284383
Target:  5'- gCCgCGGCCGAGgccucagccgUGCCGCCc-GGCg -3'
miRNA:   3'- -GGgGCCGGCUCaa--------ACGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 82441 0.74 0.29362
Target:  5'- cCCCCGGCCGGccccgcgccgccgUUGCCGCCcccGGCc -3'
miRNA:   3'- -GGGGCCGGCUca-----------AACGGCGGaa-CCGa -5'
23716 5' -60.1 NC_005261.1 + 35727 0.74 0.304462
Target:  5'- gCCCCGGCCGAG---GCCaCCUgGGCc -3'
miRNA:   3'- -GGGGCCGGCUCaaaCGGcGGAaCCGa -5'
23716 5' -60.1 NC_005261.1 + 125870 0.73 0.311393
Target:  5'- aCUCGGCCGGGgc-GgCGCCcUUGGCUg -3'
miRNA:   3'- gGGGCCGGCUCaaaCgGCGG-AACCGA- -5'
23716 5' -60.1 NC_005261.1 + 68350 0.73 0.318443
Target:  5'- aCCUGGCCGAGUgcuucgUGUCGCUc-GGCg -3'
miRNA:   3'- gGGGCCGGCUCAa-----ACGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 87770 0.73 0.318443
Target:  5'- gCCCUGGCgCGAGggucaCCGUCUUGGCc -3'
miRNA:   3'- -GGGGCCG-GCUCaaac-GGCGGAACCGa -5'
23716 5' -60.1 NC_005261.1 + 28838 0.73 0.340309
Target:  5'- gCCgCGGCUGAGgcgGCCGUCgUGGCc -3'
miRNA:   3'- -GGgGCCGGCUCaaaCGGCGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 130861 0.73 0.347835
Target:  5'- gCCCGGCCGGGcgccGCgGCC-UGGCc -3'
miRNA:   3'- gGGGCCGGCUCaaa-CGgCGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 73136 0.72 0.355479
Target:  5'- uCCCCgGGCCGGGcucgcGCCGCCa-GGCg -3'
miRNA:   3'- -GGGG-CCGGCUCaaa--CGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 37267 0.72 0.355479
Target:  5'- aUCCUGGCCGAGccgUGCCGC---GGCg -3'
miRNA:   3'- -GGGGCCGGCUCaa-ACGGCGgaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 38624 0.72 0.355479
Target:  5'- gCCgCGGCCGAGcccGCCGCCgacGGUg -3'
miRNA:   3'- -GGgGCCGGCUCaaaCGGCGGaa-CCGa -5'
23716 5' -60.1 NC_005261.1 + 109019 0.72 0.363241
Target:  5'- aCCgGGCCGAac--GCCGCCgUGGCg -3'
miRNA:   3'- gGGgCCGGCUcaaaCGGCGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 74446 0.72 0.379115
Target:  5'- cCCCCGGCgGGGggugggggcGCCGCCcccGGCg -3'
miRNA:   3'- -GGGGCCGgCUCaaa------CGGCGGaa-CCGa -5'
23716 5' -60.1 NC_005261.1 + 67781 0.71 0.407145
Target:  5'- cCCCCGGCCGcccccuccuCCGCCUcGGCg -3'
miRNA:   3'- -GGGGCCGGCucaaac---GGCGGAaCCGa -5'
23716 5' -60.1 NC_005261.1 + 17309 0.71 0.412225
Target:  5'- aCCCGGCCGGGgucGCgGCCc-GGCc -3'
miRNA:   3'- gGGGCCGGCUCaaaCGgCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 2725 0.71 0.420778
Target:  5'- gCCCCGGCCGAc-UUGCgcuugCGCCgcGGCg -3'
miRNA:   3'- -GGGGCCGGCUcaAACG-----GCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 124747 0.71 0.4382
Target:  5'- uCCCCGcaGCCGcAGcg-GCCGCCUccaGGCUg -3'
miRNA:   3'- -GGGGC--CGGC-UCaaaCGGCGGAa--CCGA- -5'
23716 5' -60.1 NC_005261.1 + 15270 0.7 0.456028
Target:  5'- gCCCCGGCgGc----GCCGCCggGGCg -3'
miRNA:   3'- -GGGGCCGgCucaaaCGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 45935 0.7 0.465088
Target:  5'- uCCCCGccgcGCgCGAGg--GCCGCCagGGCg -3'
miRNA:   3'- -GGGGC----CG-GCUCaaaCGGCGGaaCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.