miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23716 5' -60.1 NC_005261.1 + 1217 0.68 0.589821
Target:  5'- cCCCCcGCCGA---UGCCGCCgucgccGGCc -3'
miRNA:   3'- -GGGGcCGGCUcaaACGGCGGaa----CCGa -5'
23716 5' -60.1 NC_005261.1 + 2725 0.71 0.420778
Target:  5'- gCCCCGGCCGAc-UUGCgcuugCGCCgcGGCg -3'
miRNA:   3'- -GGGGCCGGCUcaAACG-----GCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 2778 0.67 0.629771
Target:  5'- gCCCGcccCCGAGgggcUGCCGCCggcGGCc -3'
miRNA:   3'- gGGGCc--GGCUCaa--ACGGCGGaa-CCGa -5'
23716 5' -60.1 NC_005261.1 + 2973 0.67 0.659774
Target:  5'- gCCCgGGCUGAGgcugggGCUcgGCC-UGGCg -3'
miRNA:   3'- -GGGgCCGGCUCaaa---CGG--CGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 4533 0.66 0.709245
Target:  5'- gCCgCGG-CGAGggcgccggGCCcugGCCUUGGCUg -3'
miRNA:   3'- -GGgGCCgGCUCaaa-----CGG---CGGAACCGA- -5'
23716 5' -60.1 NC_005261.1 + 4752 0.67 0.649784
Target:  5'- uCCCCGGCuCGGGcuuggGCCugGCUUcGGCUu -3'
miRNA:   3'- -GGGGCCG-GCUCaaa--CGG--CGGAaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 4886 0.67 0.679683
Target:  5'- gCCUCaGCCGcg---GCCGCCUcGGCUu -3'
miRNA:   3'- -GGGGcCGGCucaaaCGGCGGAaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 8791 0.67 0.679683
Target:  5'- cCCUCGGCgGcugcaGCCGCCgagGGCUu -3'
miRNA:   3'- -GGGGCCGgCucaaaCGGCGGaa-CCGA- -5'
23716 5' -60.1 NC_005261.1 + 10692 0.68 0.609764
Target:  5'- cUCCCGGCaaaGGcGUUcgcggGCCGCCUccgGGCc -3'
miRNA:   3'- -GGGGCCGg--CU-CAAa----CGGCGGAa--CCGa -5'
23716 5' -60.1 NC_005261.1 + 11041 0.69 0.540587
Target:  5'- cCCCCGGCggcacuCGGGc--GCCGCCcaGGCg -3'
miRNA:   3'- -GGGGCCG------GCUCaaaCGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 11920 0.67 0.679683
Target:  5'- gCCCGGCCGGcGgcUGCggcggcccgCGCCgcGGCg -3'
miRNA:   3'- gGGGCCGGCU-CaaACG---------GCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 12336 0.66 0.709245
Target:  5'- gCuuGGCCGGcgcgGCCGCCgccgcGGCg -3'
miRNA:   3'- gGggCCGGCUcaaaCGGCGGaa---CCGa -5'
23716 5' -60.1 NC_005261.1 + 14242 0.66 0.709245
Target:  5'- gCgCCGGCCGGGgccuUUGCC-CCggugucGGCUu -3'
miRNA:   3'- -GgGGCCGGCUCa---AACGGcGGaa----CCGA- -5'
23716 5' -60.1 NC_005261.1 + 14529 0.68 0.609764
Target:  5'- gCCCGGCgGuGgcgcgGCCGCCc-GGCg -3'
miRNA:   3'- gGGGCCGgCuCaaa--CGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 15270 0.7 0.456028
Target:  5'- gCCCCGGCgGc----GCCGCCggGGCg -3'
miRNA:   3'- -GGGGCCGgCucaaaCGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 16251 0.68 0.589821
Target:  5'- gUCCGcGCCGGG---GCCGCCggGGCc -3'
miRNA:   3'- gGGGC-CGGCUCaaaCGGCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 17309 0.71 0.412225
Target:  5'- aCCCGGCCGGGgucGCgGCCc-GGCc -3'
miRNA:   3'- gGGGCCGGCUCaaaCGgCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 19945 0.67 0.63978
Target:  5'- gUCCUGGgCGGGggugggGCgGCCUcGGCUg -3'
miRNA:   3'- -GGGGCCgGCUCaaa---CGgCGGAaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 20637 0.68 0.569996
Target:  5'- -gCCGGCCcGGUUcGCCGCCcgcaccgccggUGGCg -3'
miRNA:   3'- ggGGCCGGcUCAAaCGGCGGa----------ACCGa -5'
23716 5' -60.1 NC_005261.1 + 21215 0.67 0.649784
Target:  5'- gCCCCGGCCGcgacGGcggGCCcGUCggcUGGCg -3'
miRNA:   3'- -GGGGCCGGC----UCaaaCGG-CGGa--ACCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.