Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23716 | 5' | -60.1 | NC_005261.1 | + | 134964 | 0.66 | 0.738243 |
Target: 5'- gCgCCGGCgacgcagacggCGAGgacgggGCCGCCggGGCg -3' miRNA: 3'- -GgGGCCG-----------GCUCaaa---CGGCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 109019 | 0.72 | 0.363241 |
Target: 5'- aCCgGGCCGAac--GCCGCCgUGGCg -3' miRNA: 3'- gGGgCCGGCUcaaaCGGCGGaACCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 74446 | 0.72 | 0.379115 |
Target: 5'- cCCCCGGCgGGGggugggggcGCCGCCcccGGCg -3' miRNA: 3'- -GGGGCCGgCUCaaa------CGGCGGaa-CCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 67781 | 0.71 | 0.407145 |
Target: 5'- cCCCCGGCCGcccccuccuCCGCCUcGGCg -3' miRNA: 3'- -GGGGCCGGCucaaac---GGCGGAaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 17309 | 0.71 | 0.412225 |
Target: 5'- aCCCGGCCGGGgucGCgGCCc-GGCc -3' miRNA: 3'- gGGGCCGGCUCaaaCGgCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 2725 | 0.71 | 0.420778 |
Target: 5'- gCCCCGGCCGAc-UUGCgcuugCGCCgcGGCg -3' miRNA: 3'- -GGGGCCGGCUcaAACG-----GCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 124747 | 0.71 | 0.4382 |
Target: 5'- uCCCCGcaGCCGcAGcg-GCCGCCUccaGGCUg -3' miRNA: 3'- -GGGGC--CGGC-UCaaaCGGCGGAa--CCGA- -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 15270 | 0.7 | 0.456028 |
Target: 5'- gCCCCGGCgGc----GCCGCCggGGCg -3' miRNA: 3'- -GGGGCCGgCucaaaCGGCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 45935 | 0.7 | 0.465088 |
Target: 5'- uCCCCGccgcGCgCGAGg--GCCGCCagGGCg -3' miRNA: 3'- -GGGGC----CG-GCUCaaaCGGCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 73136 | 0.72 | 0.355479 |
Target: 5'- uCCCCgGGCCGGGcucgcGCCGCCa-GGCg -3' miRNA: 3'- -GGGG-CCGGCUCaaa--CGGCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 37267 | 0.72 | 0.355479 |
Target: 5'- aUCCUGGCCGAGccgUGCCGC---GGCg -3' miRNA: 3'- -GGGGCCGGCUCaa-ACGGCGgaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 38624 | 0.72 | 0.355479 |
Target: 5'- gCCgCGGCCGAGcccGCCGCCgacGGUg -3' miRNA: 3'- -GGgGCCGGCUCaaaCGGCGGaa-CCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 91130 | 0.74 | 0.284383 |
Target: 5'- gCCgCGGCCGAGgccucagccgUGCCGCCc-GGCg -3' miRNA: 3'- -GGgGCCGGCUCaa--------ACGGCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 82441 | 0.74 | 0.29362 |
Target: 5'- cCCCCGGCCGGccccgcgccgccgUUGCCGCCcccGGCc -3' miRNA: 3'- -GGGGCCGGCUca-----------AACGGCGGaa-CCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 35727 | 0.74 | 0.304462 |
Target: 5'- gCCCCGGCCGAG---GCCaCCUgGGCc -3' miRNA: 3'- -GGGGCCGGCUCaaaCGGcGGAaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 125870 | 0.73 | 0.311393 |
Target: 5'- aCUCGGCCGGGgc-GgCGCCcUUGGCUg -3' miRNA: 3'- gGGGCCGGCUCaaaCgGCGG-AACCGA- -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 87770 | 0.73 | 0.318443 |
Target: 5'- gCCCUGGCgCGAGggucaCCGUCUUGGCc -3' miRNA: 3'- -GGGGCCG-GCUCaaac-GGCGGAACCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 68350 | 0.73 | 0.318443 |
Target: 5'- aCCUGGCCGAGUgcuucgUGUCGCUc-GGCg -3' miRNA: 3'- gGGGCCGGCUCAa-----ACGGCGGaaCCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 28838 | 0.73 | 0.340309 |
Target: 5'- gCCgCGGCUGAGgcgGCCGUCgUGGCc -3' miRNA: 3'- -GGgGCCGGCUCaaaCGGCGGaACCGa -5' |
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23716 | 5' | -60.1 | NC_005261.1 | + | 130861 | 0.73 | 0.347835 |
Target: 5'- gCCCGGCCGGGcgccGCgGCC-UGGCc -3' miRNA: 3'- gGGGCCGGCUCaaa-CGgCGGaACCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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