miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 76304 0.66 0.985621
Target:  5'- --uGGGCUuCGUgccgCUGUucACCU-CCGCg -3'
miRNA:   3'- ccuUCCGAuGCAa---GACG--UGGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 53135 0.66 0.985621
Target:  5'- aGGgcGGCgUACGcgC-GCGCCgucgcgCCGCc -3'
miRNA:   3'- -CCuuCCG-AUGCaaGaCGUGGaa----GGCG- -5'
23723 3' -52.1 NC_005261.1 + 70455 0.66 0.985621
Target:  5'- uGGAGGGUgUACG-UCaGC-CCgcgCCGCg -3'
miRNA:   3'- -CCUUCCG-AUGCaAGaCGuGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 112932 0.66 0.985621
Target:  5'- cGAGGGCgGCGcgCU-CGCCUUcgacuucgCCGCg -3'
miRNA:   3'- cCUUCCGaUGCaaGAcGUGGAA--------GGCG- -5'
23723 3' -52.1 NC_005261.1 + 34643 0.66 0.983793
Target:  5'- aGGAGGCccccGCGUUCgUGCGCagcCUGCu -3'
miRNA:   3'- cCUUCCGa---UGCAAG-ACGUGgaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 83799 0.66 0.983793
Target:  5'- uGGAAGuugUACG-UCUGCACCUgcCCGa -3'
miRNA:   3'- -CCUUCcg-AUGCaAGACGUGGAa-GGCg -5'
23723 3' -52.1 NC_005261.1 + 133567 0.66 0.983793
Target:  5'- cGGggGGCggACGgcua--ACCUUgCCGCg -3'
miRNA:   3'- -CCuuCCGa-UGCaagacgUGGAA-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 58088 0.66 0.983793
Target:  5'- -cAGGGCccGCGUccUCgggcgGCACCagCCGCg -3'
miRNA:   3'- ccUUCCGa-UGCA--AGa----CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 89607 0.66 0.983793
Target:  5'- cGAcGGCUACGggaagCUgaaccgcggcgGCGUCUUCCGCg -3'
miRNA:   3'- cCUuCCGAUGCaa---GA-----------CGUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 103514 0.66 0.983793
Target:  5'- cGGAcGGCgGCGUcCgcgGCAUCcgCCGCc -3'
miRNA:   3'- -CCUuCCGaUGCAaGa--CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 102586 0.66 0.983793
Target:  5'- cGucGGCgGCc-UCgcccGCGCCUUCCGCg -3'
miRNA:   3'- cCuuCCGaUGcaAGa---CGUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 97167 0.66 0.983793
Target:  5'- cGGccGGCUGgGUcgCggGCGCCggccgggCCGCg -3'
miRNA:   3'- -CCuuCCGAUgCAa-Ga-CGUGGaa-----GGCG- -5'
23723 3' -52.1 NC_005261.1 + 98000 0.66 0.981795
Target:  5'- uGGGAGGCgGCGggg-GCGCUggCgGCg -3'
miRNA:   3'- -CCUUCCGaUGCaagaCGUGGaaGgCG- -5'
23723 3' -52.1 NC_005261.1 + 33946 0.66 0.981795
Target:  5'- aGGAuGGCgcCGccugucgCUGgACCUUCUGCc -3'
miRNA:   3'- -CCUuCCGauGCaa-----GACgUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 118386 0.66 0.981795
Target:  5'- cGGcccGAGGCgcugGCGgcCgcggGCGCCgcagCCGCg -3'
miRNA:   3'- -CC---UUCCGa---UGCaaGa---CGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 14741 0.66 0.981795
Target:  5'- cGGu-GGCagggGCGaUCgGCGCCgcgCCGCg -3'
miRNA:   3'- -CCuuCCGa---UGCaAGaCGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 118188 0.66 0.981795
Target:  5'- --uGGGCcGCGggCcccGCGCCUgCCGCg -3'
miRNA:   3'- ccuUCCGaUGCaaGa--CGUGGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 31756 0.66 0.981795
Target:  5'- cGGGcAGGCgcACGUguacCUGCGCg--CCGCg -3'
miRNA:   3'- -CCU-UCCGa-UGCAa---GACGUGgaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 70648 0.66 0.981795
Target:  5'- ---cGGCgcugAgGUUCgGCGCCgcggCCGCg -3'
miRNA:   3'- ccuuCCGa---UgCAAGaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 33368 0.66 0.981586
Target:  5'- cGGGccgcgccGGGCUGCGggCcGCcgcaGCCgccgCCGCa -3'
miRNA:   3'- -CCU-------UCCGAUGCaaGaCG----UGGaa--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.