miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 3' -54.3 NC_005261.1 + 106079 0.69 0.863744
Target:  5'- -uUGcgGaACCCCAcagcggcgAUCGCgaCGUCGGCCg -3'
miRNA:   3'- gcACuaC-UGGGGU--------UAGCG--GCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 15574 0.69 0.868982
Target:  5'- aCGcGGUcGCCUguagcaugacgaagCAGUCGCCGUCGACg -3'
miRNA:   3'- -GCaCUAcUGGG--------------GUUAGCGGCAGCUGg -5'
23727 3' -54.3 NC_005261.1 + 40027 0.69 0.871195
Target:  5'- -----gGGCCCgCAGUCGaCCG-CGACCa -3'
miRNA:   3'- gcacuaCUGGG-GUUAGC-GGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 118497 0.69 0.871195
Target:  5'- gCGcUGcgGACCCUGG-CGCCGcUCGGCg -3'
miRNA:   3'- -GC-ACuaCUGGGGUUaGCGGC-AGCUGg -5'
23727 3' -54.3 NC_005261.1 + 76672 0.69 0.871195
Target:  5'- cCGUGcUGGCCC---UCGCCGaCGACg -3'
miRNA:   3'- -GCACuACUGGGguuAGCGGCaGCUGg -5'
23727 3' -54.3 NC_005261.1 + 71356 0.68 0.883367
Target:  5'- gGUGAgcgccgagagcgcgaGCCCCAGccgCGCCG-CGACCc -3'
miRNA:   3'- gCACUac-------------UGGGGUUa--GCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 15237 0.68 0.885449
Target:  5'- gCGuUGA-GGCCCCGcUCGCaGUgGGCCg -3'
miRNA:   3'- -GC-ACUaCUGGGGUuAGCGgCAgCUGG- -5'
23727 3' -54.3 NC_005261.1 + 10517 0.68 0.892242
Target:  5'- cCGcUGcgGGCCCCGcggcgcgcUCGCUGUCGcCCc -3'
miRNA:   3'- -GC-ACuaCUGGGGUu-------AGCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 37621 0.68 0.892242
Target:  5'- gGUGAUGGCCUCua-CGCCuagCGGCg -3'
miRNA:   3'- gCACUACUGGGGuuaGCGGca-GCUGg -5'
23727 3' -54.3 NC_005261.1 + 121522 0.68 0.892242
Target:  5'- cCGUcGAUGGCgagcuCCUcGUCGCUGUCGgaGCCg -3'
miRNA:   3'- -GCA-CUACUG-----GGGuUAGCGGCAGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 106326 0.68 0.898807
Target:  5'- uCGUGAgccacGGCCCCGc-CGCCG-CGuCCg -3'
miRNA:   3'- -GCACUa----CUGGGGUuaGCGGCaGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 77632 0.68 0.898807
Target:  5'- ---cAUGGCCCUGgccggcgccAUCGCCGaCGGCCg -3'
miRNA:   3'- gcacUACUGGGGU---------UAGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 36377 0.68 0.898807
Target:  5'- -cUGGcacgGGCCCCAGUCuGCCGgcccUGGCCc -3'
miRNA:   3'- gcACUa---CUGGGGUUAG-CGGCa---GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 12129 0.68 0.898807
Target:  5'- --gGAUGGCgCCCGc-CGCCGcggCGGCCg -3'
miRNA:   3'- gcaCUACUG-GGGUuaGCGGCa--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 1211 0.68 0.90514
Target:  5'- --cGcgGACCCCccgccGAUgcCGCCGUCG-CCg -3'
miRNA:   3'- gcaCuaCUGGGG-----UUA--GCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 51259 0.68 0.90514
Target:  5'- cCGUGcUGcugcuguCCCacaaGAUCGCCGUCcuGGCCg -3'
miRNA:   3'- -GCACuACu------GGGg---UUAGCGGCAG--CUGG- -5'
23727 3' -54.3 NC_005261.1 + 111205 0.68 0.90514
Target:  5'- aGUGG-GGCCgCCAcgcccuucgaGUCGCCGUuaaauauccccgCGGCCg -3'
miRNA:   3'- gCACUaCUGG-GGU----------UAGCGGCA------------GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 95957 0.68 0.90514
Target:  5'- cCGgGAUcGACCCCAGcgCGCCGgCcACCa -3'
miRNA:   3'- -GCaCUA-CUGGGGUUa-GCGGCaGcUGG- -5'
23727 3' -54.3 NC_005261.1 + 102229 0.68 0.911239
Target:  5'- -----cGGCCUCGAUggcCGCCGUCGcCCg -3'
miRNA:   3'- gcacuaCUGGGGUUA---GCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 47238 0.67 0.917102
Target:  5'- -cUGG-GGCCCCAGaaaGCCGagGACCu -3'
miRNA:   3'- gcACUaCUGGGGUUag-CGGCagCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.