Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 90996 | 0.66 | 0.966429 |
Target: 5'- aCCUCGgccUCGUCGccGGCGGCAaGAuGCu -3' miRNA: 3'- -GGAGCaucGGCAGC--UUGCCGUaCU-CG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 16732 | 0.66 | 0.966429 |
Target: 5'- cCCUCGgcgAGCCGcgCGGGCGccgcCAUGAccaGCc -3' miRNA: 3'- -GGAGCa--UCGGCa-GCUUGCc---GUACU---CG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 102305 | 0.66 | 0.972403 |
Target: 5'- -gUCGUAGCCGcgcgccgCGGccGCGGCGcGcAGCc -3' miRNA: 3'- ggAGCAUCGGCa------GCU--UGCCGUaC-UCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 78269 | 0.66 | 0.96546 |
Target: 5'- uCUUCGUGGCCca-GAugauGCGGCAUcgcuaggaaaaggcGAGCc -3' miRNA: 3'- -GGAGCAUCGGcagCU----UGCCGUA--------------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 85910 | 0.66 | 0.958496 |
Target: 5'- gCCUCgGUGGCCugcUCGAccgugcucuggaugGCGGCcaGGGCg -3' miRNA: 3'- -GGAG-CAUCGGc--AGCU--------------UGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 109846 | 0.66 | 0.96952 |
Target: 5'- --gCGU-GCCGUUGGugGCGGCuccuggGGGCa -3' miRNA: 3'- ggaGCAuCGGCAGCU--UGCCGua----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 87088 | 0.67 | 0.951865 |
Target: 5'- --aCGUAGCCGUgcaGcAGCGcGCA-GAGCg -3' miRNA: 3'- ggaGCAUCGGCAg--C-UUGC-CGUaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 67802 | 0.67 | 0.947649 |
Target: 5'- gCCUCGgcGCCGcccaguggcaacUCGGGCGcGCGcagGAGg -3' miRNA: 3'- -GGAGCauCGGC------------AGCUUGC-CGUa--CUCg -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 55437 | 0.67 | 0.943197 |
Target: 5'- aCCgCG-AGCCcucCGAGCGGCgcgGUGGGCc -3' miRNA: 3'- -GGaGCaUCGGca-GCUUGCCG---UACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 69501 | 0.67 | 0.955846 |
Target: 5'- aCCU-GUAcGCCGgcggCGGGCuGCcgGAGCu -3' miRNA: 3'- -GGAgCAU-CGGCa---GCUUGcCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 76543 | 0.67 | 0.938505 |
Target: 5'- aCCUC---GCCcUCu-ACGGCAUGGGCg -3' miRNA: 3'- -GGAGcauCGGcAGcuUGCCGUACUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 103598 | 0.67 | 0.955846 |
Target: 5'- gCCgcCGUGGCCG-CG-GCGGCAgcgcggGAGg -3' miRNA: 3'- -GGa-GCAUCGGCaGCuUGCCGUa-----CUCg -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 47516 | 0.67 | 0.938505 |
Target: 5'- uCUUCGUGGUCagcUCGAacucgACGGCGUucccGGGCg -3' miRNA: 3'- -GGAGCAUCGGc--AGCU-----UGCCGUA----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 14157 | 0.68 | 0.933572 |
Target: 5'- gCUCc-AGCCG-CGAACGGCGcgcgucucgGGGCg -3' miRNA: 3'- gGAGcaUCGGCaGCUUGCCGUa--------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 85574 | 0.68 | 0.933572 |
Target: 5'- gUUCGgcGCCG-CGAccGCGGCcuccgcGAGCg -3' miRNA: 3'- gGAGCauCGGCaGCU--UGCCGua----CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 93549 | 0.68 | 0.933065 |
Target: 5'- gCCgcccaGUAGCgGUCGAcggcgguGCGGCggGAcGCg -3' miRNA: 3'- -GGag---CAUCGgCAGCU-------UGCCGuaCU-CG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 101674 | 0.68 | 0.928396 |
Target: 5'- gCCUCGUaggccgAGCCGgCGAAgcgGGCGUGgucgaAGCg -3' miRNA: 3'- -GGAGCA------UCGGCaGCUUg--CCGUAC-----UCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 31474 | 0.68 | 0.928396 |
Target: 5'- gCCUgaGUGGCCGcCGGugcGCGGC--GGGCu -3' miRNA: 3'- -GGAg-CAUCGGCaGCU---UGCCGuaCUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 80040 | 0.68 | 0.905264 |
Target: 5'- gCCgUCGccGCCGUCGccacuGGCGGCGggcgcgggGGGCg -3' miRNA: 3'- -GG-AGCauCGGCAGC-----UUGCCGUa-------CUCG- -5' |
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23735 | 5' | -53.5 | NC_005261.1 | + | 17154 | 0.68 | 0.911409 |
Target: 5'- --aCGUAGaCCGUCacccGCGGCGcGGGCg -3' miRNA: 3'- ggaGCAUC-GGCAGcu--UGCCGUaCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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