miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 64508 0.65 0.974563
Target:  5'- gCUCGgGGcCCG-CGGGCGGCuccucgucgggGGGCa -3'
miRNA:   3'- gGAGCaUC-GGCaGCUUGCCGua---------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 102786 0.66 0.966429
Target:  5'- gCCUCGccccGGCCG-CGAgcGCGGCGcccAGCc -3'
miRNA:   3'- -GGAGCa---UCGGCaGCU--UGCCGUac-UCG- -5'
23735 5' -53.5 NC_005261.1 + 109846 0.66 0.96952
Target:  5'- --gCGU-GCCGUUGGugGCGGCuccuggGGGCa -3'
miRNA:   3'- ggaGCAuCGGCAGCU--UGCCGua----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 96118 0.66 0.963124
Target:  5'- aCgUCGcUGGCCaugGUCGAccuGCGGCGgcGGCa -3'
miRNA:   3'- -GgAGC-AUCGG---CAGCU---UGCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 1404 0.66 0.959598
Target:  5'- --cCGcGGCCG-CGGcgGCGGCggGGGCg -3'
miRNA:   3'- ggaGCaUCGGCaGCU--UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 16295 0.66 0.959598
Target:  5'- ---gGgcGCCGUCGGgcccaGCGGCGgccGGGCc -3'
miRNA:   3'- ggagCauCGGCAGCU-----UGCCGUa--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 47857 0.66 0.959598
Target:  5'- --gCGUGGCCGagCGuagccAGCGGCAgcguccgggGAGCg -3'
miRNA:   3'- ggaGCAUCGGCa-GC-----UUGCCGUa--------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 125727 0.66 0.972403
Target:  5'- gCUCGgcuggGGCCGcCGcaaGGgGGCcgGGGCc -3'
miRNA:   3'- gGAGCa----UCGGCaGC---UUgCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 127332 0.66 0.959598
Target:  5'- cCCgCGggGGCCG--GAGCGGCG-GGGCg -3'
miRNA:   3'- -GGaGCa-UCGGCagCUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 105153 0.66 0.972403
Target:  5'- uCCUCGcGGCUcgaGGGCGGCGUccacgGGGCc -3'
miRNA:   3'- -GGAGCaUCGGcagCUUGCCGUA-----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 85910 0.66 0.958496
Target:  5'- gCCUCgGUGGCCugcUCGAccgugcucuggaugGCGGCcaGGGCg -3'
miRNA:   3'- -GGAG-CAUCGGc--AGCU--------------UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 2524 0.66 0.959598
Target:  5'- aCCUCGgggcggcaguaGGCCGccagCGccGCGGCGcUGGGCg -3'
miRNA:   3'- -GGAGCa----------UCGGCa---GCu-UGCCGU-ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 1766 0.66 0.959598
Target:  5'- aCCgUGUAGCgcaCGUUGGcgccGCGGCA-GAGCc -3'
miRNA:   3'- -GGaGCAUCG---GCAGCU----UGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 90996 0.66 0.966429
Target:  5'- aCCUCGgccUCGUCGccGGCGGCAaGAuGCu -3'
miRNA:   3'- -GGAGCaucGGCAGC--UUGCCGUaCU-CG- -5'
23735 5' -53.5 NC_005261.1 + 16448 0.66 0.96952
Target:  5'- gCUCGUAGCCcuUCGAcuccucaaaguACGGCGggacGAcGCc -3'
miRNA:   3'- gGAGCAUCGGc-AGCU-----------UGCCGUa---CU-CG- -5'
23735 5' -53.5 NC_005261.1 + 111587 0.66 0.972124
Target:  5'- gCUCGaGGCCGagcacgCGGagugggcGCGGC-UGGGCu -3'
miRNA:   3'- gGAGCaUCGGCa-----GCU-------UGCCGuACUCG- -5'
23735 5' -53.5 NC_005261.1 + 78269 0.66 0.96546
Target:  5'- uCUUCGUGGCCca-GAugauGCGGCAUcgcuaggaaaaggcGAGCc -3'
miRNA:   3'- -GGAGCAUCGGcagCU----UGCCGUA--------------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 102305 0.66 0.972403
Target:  5'- -gUCGUAGCCGcgcgccgCGGccGCGGCGcGcAGCc -3'
miRNA:   3'- ggAGCAUCGGCa------GCU--UGCCGUaC-UCG- -5'
23735 5' -53.5 NC_005261.1 + 44421 0.66 0.970698
Target:  5'- cCCgCGUAcGCCGaCGAcguggagcggcucucGCGGCuguggGAGCa -3'
miRNA:   3'- -GGaGCAU-CGGCaGCU---------------UGCCGua---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 55068 0.66 0.959598
Target:  5'- gCUCG--GCCGcCGAA-GGCAUGcGCa -3'
miRNA:   3'- gGAGCauCGGCaGCUUgCCGUACuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.