miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 58563 0.82 0.249691
Target:  5'- gCCgUCGUGGCCG-CGAGCGGC--GAGCg -3'
miRNA:   3'- -GG-AGCAUCGGCaGCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 61179 0.81 0.288192
Target:  5'- uCUUCGUGGCCGUCGAG-GGCAacAGCa -3'
miRNA:   3'- -GGAGCAUCGGCAGCUUgCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 2607 0.78 0.430698
Target:  5'- gCCgUCGgcggcggGGCCGcCGGGCGGCAUGGGg -3'
miRNA:   3'- -GG-AGCa------UCGGCaGCUUGCCGUACUCg -5'
23735 5' -53.5 NC_005261.1 + 46079 0.78 0.439752
Target:  5'- gCCUCGUGGCCGgacaCGAgcacguACGGCcgGGGg -3'
miRNA:   3'- -GGAGCAUCGGCa---GCU------UGCCGuaCUCg -5'
23735 5' -53.5 NC_005261.1 + 120589 0.77 0.505954
Target:  5'- gCgUCGUGGCCGUCGccuGCGGCcucGGCg -3'
miRNA:   3'- -GgAGCAUCGGCAGCu--UGCCGuacUCG- -5'
23735 5' -53.5 NC_005261.1 + 64670 0.76 0.535622
Target:  5'- aCUCGUcGCCGUgGuGCGGCAccGGGCg -3'
miRNA:   3'- gGAGCAuCGGCAgCuUGCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 93717 0.76 0.555736
Target:  5'- uCCUCGUcGUCGUCG-GCGGCGgcAGCg -3'
miRNA:   3'- -GGAGCAuCGGCAGCuUGCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 35090 0.75 0.565876
Target:  5'- cCCUCGgAGCCGcggUGAGCGGC--GAGCc -3'
miRNA:   3'- -GGAGCaUCGGCa--GCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 136814 0.75 0.586292
Target:  5'- gCUCGUAGCCGUa-GACGGCgcccccgcgcGUGAGg -3'
miRNA:   3'- gGAGCAUCGGCAgcUUGCCG----------UACUCg -5'
23735 5' -53.5 NC_005261.1 + 48307 0.74 0.637791
Target:  5'- gCCUCGgggGGCgCGUCGGGCccgGGCucggGGGCg -3'
miRNA:   3'- -GGAGCa--UCG-GCAGCUUG---CCGua--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 112653 0.74 0.648109
Target:  5'- cCUUCGcAGCCGaguaCGAGCGGCugGAGCg -3'
miRNA:   3'- -GGAGCaUCGGCa---GCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 71330 0.74 0.668699
Target:  5'- --aCGUAGCCGgccgCGAGCGcGUccucgGUGAGCg -3'
miRNA:   3'- ggaGCAUCGGCa---GCUUGC-CG-----UACUCG- -5'
23735 5' -53.5 NC_005261.1 + 86995 0.74 0.668699
Target:  5'- cCCUCGUGGCCcucGUCGAA-GGCcaaGUGcGCg -3'
miRNA:   3'- -GGAGCAUCGG---CAGCUUgCCG---UACuCG- -5'
23735 5' -53.5 NC_005261.1 + 132887 0.73 0.678952
Target:  5'- uCUUCGgcaAGCCGggcgccgCGGGCGGCGccGAGCg -3'
miRNA:   3'- -GGAGCa--UCGGCa------GCUUGCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 98949 0.73 0.709442
Target:  5'- uCCUCGUAGUCGagCGucaggcuCGGCAggucccgGAGCa -3'
miRNA:   3'- -GGAGCAUCGGCa-GCuu-----GCCGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 121537 0.73 0.719485
Target:  5'- uCCUCGUcGCUGUCGGAgccgccguccuCGGCGaaGGGCg -3'
miRNA:   3'- -GGAGCAuCGGCAGCUU-----------GCCGUa-CUCG- -5'
23735 5' -53.5 NC_005261.1 + 81332 0.72 0.749116
Target:  5'- gCCgUCGUcggGGCCGUCGGcGgGGCggGGGCu -3'
miRNA:   3'- -GG-AGCA---UCGGCAGCU-UgCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 127830 0.72 0.758797
Target:  5'- gCUCGcGGCCG-CGAGCaGCGgacgGGGCg -3'
miRNA:   3'- gGAGCaUCGGCaGCUUGcCGUa---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 131994 0.72 0.768364
Target:  5'- cCUUCGcAGUCG-CGGACGGCGacaacUGGGCc -3'
miRNA:   3'- -GGAGCaUCGGCaGCUUGCCGU-----ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 82594 0.71 0.787119
Target:  5'- uCCUCGUugcGCUGgucCGGGCG-CGUGAGCc -3'
miRNA:   3'- -GGAGCAu--CGGCa--GCUUGCcGUACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.