miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 1404 0.66 0.959598
Target:  5'- --cCGcGGCCG-CGGcgGCGGCggGGGCg -3'
miRNA:   3'- ggaGCaUCGGCaGCU--UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 1766 0.66 0.959598
Target:  5'- aCCgUGUAGCgcaCGUUGGcgccGCGGCA-GAGCc -3'
miRNA:   3'- -GGaGCAUCG---GCAGCU----UGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 2524 0.66 0.959598
Target:  5'- aCCUCGgggcggcaguaGGCCGccagCGccGCGGCGcUGGGCg -3'
miRNA:   3'- -GGAGCa----------UCGGCa---GCu-UGCCGU-ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 2607 0.78 0.430698
Target:  5'- gCCgUCGgcggcggGGCCGcCGGGCGGCAUGGGg -3'
miRNA:   3'- -GG-AGCa------UCGGCaGCUUGCCGUACUCg -5'
23735 5' -53.5 NC_005261.1 + 8791 0.66 0.972403
Target:  5'- cCCUCGgcggcugcAGCCGcCGAG-GGCuugaagGGGCg -3'
miRNA:   3'- -GGAGCa-------UCGGCaGCUUgCCGua----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 11022 0.69 0.892261
Target:  5'- gCCUCGUcgccgGGcCCGUCccccGGCGGCAcucGGGCg -3'
miRNA:   3'- -GGAGCA-----UC-GGCAGc---UUGCCGUa--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 12702 0.69 0.88541
Target:  5'- aCCUUGaAGCC--CGAGCGGCucGGGCg -3'
miRNA:   3'- -GGAGCaUCGGcaGCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 13110 0.69 0.89888
Target:  5'- gCUCGgGGgCGUCG-GCGGCcgcgGGGCg -3'
miRNA:   3'- gGAGCaUCgGCAGCuUGCCGua--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 13377 0.68 0.927865
Target:  5'- gCUCGUacAGCCGgcuguacgcggucUCgGAGCGGUA-GGGCg -3'
miRNA:   3'- gGAGCA--UCGGC-------------AG-CUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 14096 0.71 0.796288
Target:  5'- aCUCGcGGUCGUCGA--GGCAgacGGGCg -3'
miRNA:   3'- gGAGCaUCGGCAGCUugCCGUa--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 14157 0.68 0.933572
Target:  5'- gCUCc-AGCCG-CGAACGGCGcgcgucucgGGGCg -3'
miRNA:   3'- gGAGcaUCGGCaGCUUGCCGUa--------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 15141 0.68 0.917314
Target:  5'- cCUUCGcccccGCCGUccgCGGugGGgGUGGGCg -3'
miRNA:   3'- -GGAGCau---CGGCA---GCUugCCgUACUCG- -5'
23735 5' -53.5 NC_005261.1 + 15384 0.7 0.855774
Target:  5'- cCCUCGgcgccGCCGUCGAugccgACGcGCAgaaaguaGAGCc -3'
miRNA:   3'- -GGAGCau---CGGCAGCU-----UGC-CGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 16234 0.7 0.855774
Target:  5'- cCCUCGgGGCgGUCGAcgucCGcGCcgGGGCc -3'
miRNA:   3'- -GGAGCaUCGgCAGCUu---GC-CGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 16295 0.66 0.959598
Target:  5'- ---gGgcGCCGUCGGgcccaGCGGCGgccGGGCc -3'
miRNA:   3'- ggagCauCGGCAGCU-----UGCCGUa--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 16448 0.66 0.96952
Target:  5'- gCUCGUAGCCcuUCGAcuccucaaaguACGGCGggacGAcGCc -3'
miRNA:   3'- gGAGCAUCGGc-AGCU-----------UGCCGUa---CU-CG- -5'
23735 5' -53.5 NC_005261.1 + 16732 0.66 0.966429
Target:  5'- cCCUCGgcgAGCCGcgCGGGCGccgcCAUGAccaGCc -3'
miRNA:   3'- -GGAGCa--UCGGCa-GCUUGCc---GUACU---CG- -5'
23735 5' -53.5 NC_005261.1 + 17059 0.71 0.796288
Target:  5'- gCUCGcGGCCGUCcuggaagggcGACGGgAUGGGCc -3'
miRNA:   3'- gGAGCaUCGGCAGc---------UUGCCgUACUCG- -5'
23735 5' -53.5 NC_005261.1 + 17154 0.68 0.911409
Target:  5'- --aCGUAGaCCGUCacccGCGGCGcGGGCg -3'
miRNA:   3'- ggaGCAUC-GGCAGcu--UGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 17855 0.69 0.892261
Target:  5'- gCCUCGUaagAGCgGcCGGcCGGCAggccaagGGGCa -3'
miRNA:   3'- -GGAGCA---UCGgCaGCUuGCCGUa------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.