miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 21728 0.69 0.869541
Target:  5'- gCUUCG-AGCCGaUCGAcacGCGGCugcugcgccugGAGCg -3'
miRNA:   3'- -GGAGCaUCGGC-AGCU---UGCCGua---------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 24381 0.68 0.922976
Target:  5'- uCC-CGgugGGCuCGUCG-GCGGCG-GGGCg -3'
miRNA:   3'- -GGaGCa--UCG-GCAGCuUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 24921 0.7 0.863507
Target:  5'- cCCUCGgcggcugcAGCCGcCGAGgGGCAggcuGGCa -3'
miRNA:   3'- -GGAGCa-------UCGGCaGCUUgCCGUac--UCG- -5'
23735 5' -53.5 NC_005261.1 + 31474 0.68 0.928396
Target:  5'- gCCUgaGUGGCCGcCGGugcGCGGC--GGGCu -3'
miRNA:   3'- -GGAg-CAUCGGCaGCU---UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 32477 0.71 0.822855
Target:  5'- aCUCGggcuucccggGGCCGgCGAcgGCGGCAUcGGCg -3'
miRNA:   3'- gGAGCa---------UCGGCaGCU--UGCCGUAcUCG- -5'
23735 5' -53.5 NC_005261.1 + 33061 0.69 0.89888
Target:  5'- aCUCGgcGCCGggGAcGCGGCGcuGGCg -3'
miRNA:   3'- gGAGCauCGGCagCU-UGCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 33596 0.71 0.805306
Target:  5'- aCCaggggCGgcGCCGgcgCGGGCGGCG-GGGCc -3'
miRNA:   3'- -GGa----GCauCGGCa--GCUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 35090 0.75 0.565876
Target:  5'- cCCUCGgAGCCGcggUGAGCGGC--GAGCc -3'
miRNA:   3'- -GGAGCaUCGGCa--GCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 41365 0.71 0.796288
Target:  5'- gCCUCGUGGugaCCGUCaccUGGCuguUGAGCa -3'
miRNA:   3'- -GGAGCAUC---GGCAGcuuGCCGu--ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 44421 0.66 0.970698
Target:  5'- cCCgCGUAcGCCGaCGAcguggagcggcucucGCGGCuguggGAGCa -3'
miRNA:   3'- -GGaGCAU-CGGCaGCU---------------UGCCGua---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 46079 0.78 0.439752
Target:  5'- gCCUCGUGGCCGgacaCGAgcacguACGGCcgGGGg -3'
miRNA:   3'- -GGAGCAUCGGCa---GCU------UGCCGuaCUCg -5'
23735 5' -53.5 NC_005261.1 + 47516 0.67 0.938505
Target:  5'- uCUUCGUGGUCagcUCGAacucgACGGCGUucccGGGCg -3'
miRNA:   3'- -GGAGCAUCGGc--AGCU-----UGCCGUA----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 47857 0.66 0.959598
Target:  5'- --gCGUGGCCGagCGuagccAGCGGCAgcguccgggGAGCg -3'
miRNA:   3'- ggaGCAUCGGCa-GC-----UUGCCGUa--------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 48307 0.74 0.637791
Target:  5'- gCCUCGgggGGCgCGUCGGGCccgGGCucggGGGCg -3'
miRNA:   3'- -GGAGCa--UCG-GCAGCUUG---CCGua--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 50983 0.71 0.805306
Target:  5'- aCCUCucGGCCGaCG-GCGGCgcGUGGGCg -3'
miRNA:   3'- -GGAGcaUCGGCaGCuUGCCG--UACUCG- -5'
23735 5' -53.5 NC_005261.1 + 55068 0.66 0.959598
Target:  5'- gCUCG--GCCGcCGAA-GGCAUGcGCa -3'
miRNA:   3'- gGAGCauCGGCaGCUUgCCGUACuCG- -5'
23735 5' -53.5 NC_005261.1 + 55437 0.67 0.943197
Target:  5'- aCCgCG-AGCCcucCGAGCGGCgcgGUGGGCc -3'
miRNA:   3'- -GGaGCaUCGGca-GCUUGCCG---UACUCG- -5'
23735 5' -53.5 NC_005261.1 + 58563 0.82 0.249691
Target:  5'- gCCgUCGUGGCCG-CGAGCGGC--GAGCg -3'
miRNA:   3'- -GG-AGCAUCGGCaGCUUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 58967 0.69 0.87833
Target:  5'- gCCUCGgcGCCcgcGUCGAaggccuccacggGCGGCGgugcgccGGGCu -3'
miRNA:   3'- -GGAGCauCGG---CAGCU------------UGCCGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 59222 0.68 0.905264
Target:  5'- gUCUCGUAguGCCGcCGGgccACGaGCGaGAGCg -3'
miRNA:   3'- -GGAGCAU--CGGCaGCU---UGC-CGUaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.